Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23155 | 3' | -59.4 | NC_005178.1 | + | 12759 | 0.74 | 0.126396 |
Target: 5'- aCCCGCGaCG-CCCUgcGCCGCGCCUAc- -3' miRNA: 3'- -GGGCGCgGUaGGGA--UGGUGCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 16720 | 0.71 | 0.190357 |
Target: 5'- gCCgGCGCCcugguccucgcAUCgCUGCgCugGCCCAGGu -3' miRNA: 3'- -GGgCGCGG-----------UAGgGAUG-GugCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4809 | 0.71 | 0.195505 |
Target: 5'- aUCGcCGCCG-CgCCUACUACGUCCAGGc -3' miRNA: 3'- gGGC-GCGGUaG-GGAUGGUGCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 1444 | 0.7 | 0.223099 |
Target: 5'- gCCCGCGCUAUaCCUggugagugcaACUAcgcCGCCCAGGu -3' miRNA: 3'- -GGGCGCGGUAgGGA----------UGGU---GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4428 | 0.7 | 0.229 |
Target: 5'- aCCGCaGCCAccaCCCaagccACCAcCGCCCAGGu -3' miRNA: 3'- gGGCG-CGGUa--GGGa----UGGU-GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 2711 | 0.7 | 0.2412 |
Target: 5'- aCCCGCGCCG-CgCUGCUGaacgcCGCCCuGGg -3' miRNA: 3'- -GGGCGCGGUaGgGAUGGU-----GCGGGuUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 11742 | 0.68 | 0.325972 |
Target: 5'- aCCCGCGCaUAUgCCacgGCCgugGCCCGAGc -3' miRNA: 3'- -GGGCGCG-GUAgGGa--UGGug-CGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 28961 | 0.68 | 0.295461 |
Target: 5'- gCCgUGCGCCAggugaCCCUG-CGCGCCCcuGg -3' miRNA: 3'- -GG-GCGCGGUa----GGGAUgGUGCGGGuuC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 23740 | 0.68 | 0.288189 |
Target: 5'- gUCGCGCCgaagccgaGUUCCUGCUGCGCCg--- -3' miRNA: 3'- gGGCGCGG--------UAGGGAUGGUGCGGguuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 18572 | 0.69 | 0.274069 |
Target: 5'- aCCCGCGCCGaCCgUgACCAgGCgCAGa -3' miRNA: 3'- -GGGCGCGGUaGGgA-UGGUgCGgGUUc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 19492 | 0.7 | 0.2412 |
Target: 5'- uCCCGCGCCGUauaCCguCCAguuCGCCCuGGa -3' miRNA: 3'- -GGGCGCGGUAg--GGauGGU---GCGGGuUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 10042 | 0.7 | 0.2412 |
Target: 5'- aCCGCGC--UCCUgGCCAgCGCCCAu- -3' miRNA: 3'- gGGCGCGguAGGGaUGGU-GCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4493 | 0.69 | 0.250058 |
Target: 5'- aCCCGCaguugGCCA--CCUGCCGgaaugcccucggugcCGCCCAGGa -3' miRNA: 3'- -GGGCG-----CGGUagGGAUGGU---------------GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 34522 | 0.7 | 0.235034 |
Target: 5'- aCCaggGCGCCAcgCUCgGCCugGUCCAGGa -3' miRNA: 3'- -GGg--CGCGGUa-GGGaUGGugCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 27221 | 0.7 | 0.217327 |
Target: 5'- -gCGCGCUucgcCCCU-CCGCGCCCGGc -3' miRNA: 3'- ggGCGCGGua--GGGAuGGUGCGGGUUc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 9425 | 0.7 | 0.217327 |
Target: 5'- -gCGcCGCCAUCggUGCCAcCGCCCAGGc -3' miRNA: 3'- ggGC-GCGGUAGggAUGGU-GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 28645 | 0.72 | 0.175622 |
Target: 5'- gCCGgGCCGaUCCUG-CugGCCCAGGg -3' miRNA: 3'- gGGCgCGGUaGGGAUgGugCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 20870 | 0.72 | 0.166371 |
Target: 5'- gCCUGCGCCGg-CCUGau-CGCCCAGGa -3' miRNA: 3'- -GGGCGCGGUagGGAUgguGCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 14097 | 0.74 | 0.122928 |
Target: 5'- uUCGCGCCGggcgCCCUgGCCGuCGCCCuGGg -3' miRNA: 3'- gGGCGCGGUa---GGGA-UGGU-GCGGGuUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 32267 | 0.66 | 0.412112 |
Target: 5'- gCUCGCGCCggCCCUgaacgguggcgGCCuCGgCCAAc -3' miRNA: 3'- -GGGCGCGGuaGGGA-----------UGGuGCgGGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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