miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 3' -59.4 NC_005178.1 + 12759 0.74 0.126396
Target:  5'- aCCCGCGaCG-CCCUgcGCCGCGCCUAc- -3'
miRNA:   3'- -GGGCGCgGUaGGGA--UGGUGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 16720 0.71 0.190357
Target:  5'- gCCgGCGCCcugguccucgcAUCgCUGCgCugGCCCAGGu -3'
miRNA:   3'- -GGgCGCGG-----------UAGgGAUG-GugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 4809 0.71 0.195505
Target:  5'- aUCGcCGCCG-CgCCUACUACGUCCAGGc -3'
miRNA:   3'- gGGC-GCGGUaG-GGAUGGUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 1444 0.7 0.223099
Target:  5'- gCCCGCGCUAUaCCUggugagugcaACUAcgcCGCCCAGGu -3'
miRNA:   3'- -GGGCGCGGUAgGGA----------UGGU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 4428 0.7 0.229
Target:  5'- aCCGCaGCCAccaCCCaagccACCAcCGCCCAGGu -3'
miRNA:   3'- gGGCG-CGGUa--GGGa----UGGU-GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 2711 0.7 0.2412
Target:  5'- aCCCGCGCCG-CgCUGCUGaacgcCGCCCuGGg -3'
miRNA:   3'- -GGGCGCGGUaGgGAUGGU-----GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 10042 0.7 0.2412
Target:  5'- aCCGCGC--UCCUgGCCAgCGCCCAu- -3'
miRNA:   3'- gGGCGCGguAGGGaUGGU-GCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 19492 0.7 0.2412
Target:  5'- uCCCGCGCCGUauaCCguCCAguuCGCCCuGGa -3'
miRNA:   3'- -GGGCGCGGUAg--GGauGGU---GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 18572 0.69 0.274069
Target:  5'- aCCCGCGCCGaCCgUgACCAgGCgCAGa -3'
miRNA:   3'- -GGGCGCGGUaGGgA-UGGUgCGgGUUc -5'
23155 3' -59.4 NC_005178.1 + 23740 0.68 0.288189
Target:  5'- gUCGCGCCgaagccgaGUUCCUGCUGCGCCg--- -3'
miRNA:   3'- gGGCGCGG--------UAGGGAUGGUGCGGguuc -5'
23155 3' -59.4 NC_005178.1 + 28961 0.68 0.295461
Target:  5'- gCCgUGCGCCAggugaCCCUG-CGCGCCCcuGg -3'
miRNA:   3'- -GG-GCGCGGUa----GGGAUgGUGCGGGuuC- -5'
23155 3' -59.4 NC_005178.1 + 11742 0.68 0.325972
Target:  5'- aCCCGCGCaUAUgCCacgGCCgugGCCCGAGc -3'
miRNA:   3'- -GGGCGCG-GUAgGGa--UGGug-CGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 32267 0.66 0.412112
Target:  5'- gCUCGCGCCggCCCUgaacgguggcgGCCuCGgCCAAc -3'
miRNA:   3'- -GGGCGCGGuaGGGA-----------UGGuGCgGGUUc -5'
23155 3' -59.4 NC_005178.1 + 3887 0.66 0.384825
Target:  5'- aCCCGa-CCGUCUgUGCCuucgguuuaGCGCCCAu- -3'
miRNA:   3'- -GGGCgcGGUAGGgAUGG---------UGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 5654 0.66 0.384825
Target:  5'- aCCggcaGCGCCAUCCCgGCgACGUCgGu- -3'
miRNA:   3'- -GGg---CGCGGUAGGGaUGgUGCGGgUuc -5'
23155 3' -59.4 NC_005178.1 + 16872 0.67 0.35876
Target:  5'- gCCG-GCCAagUCCUUggcGCCguauucacGCGCCCAGGg -3'
miRNA:   3'- gGGCgCGGU--AGGGA---UGG--------UGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 14185 0.67 0.35876
Target:  5'- gCCCGacuGCCG-CCCUgguGCgACGCCCcGGu -3'
miRNA:   3'- -GGGCg--CGGUaGGGA---UGgUGCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 23659 0.67 0.342082
Target:  5'- gUCCGCGCUggCCCguUCACGCCgGGc -3'
miRNA:   3'- -GGGCGCGGuaGGGauGGUGCGGgUUc -5'
23155 3' -59.4 NC_005178.1 + 27104 0.69 0.274069
Target:  5'- aUCGCGCCA-CCgUACCAgCGCCUu-- -3'
miRNA:   3'- gGGCGCGGUaGGgAUGGU-GCGGGuuc -5'
23155 3' -59.4 NC_005178.1 + 17868 0.69 0.253936
Target:  5'- uCCgGCGCCAUCUUcugGCCAaGCCCuGGc -3'
miRNA:   3'- -GGgCGCGGUAGGGa--UGGUgCGGGuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.