miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 3' -59.4 NC_005178.1 + 14097 0.74 0.122928
Target:  5'- uUCGCGCCGggcgCCCUgGCCGuCGCCCuGGg -3'
miRNA:   3'- gGGCGCGGUa---GGGA-UGGU-GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 14185 0.67 0.35876
Target:  5'- gCCCGacuGCCG-CCCUgguGCgACGCCCcGGu -3'
miRNA:   3'- -GGGCg--CGGUaGGGA---UGgUGCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 15247 0.67 0.342082
Target:  5'- gCUGCGCCAcuUCCCggccgcagACCACGacgauggcCCCGAc -3'
miRNA:   3'- gGGCGCGGU--AGGGa-------UGGUGC--------GGGUUc -5'
23155 3' -59.4 NC_005178.1 + 16485 0.69 0.250058
Target:  5'- aUCCGCGCCAUUgCgguuguCCACguauuccucagcgcgGCCCAGGu -3'
miRNA:   3'- -GGGCGCGGUAGgGau----GGUG---------------CGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16525 0.67 0.375998
Target:  5'- gCCGCGCC--CCCcGCCugGUCUucGa -3'
miRNA:   3'- gGGCGCGGuaGGGaUGGugCGGGuuC- -5'
23155 3' -59.4 NC_005178.1 + 16720 0.71 0.190357
Target:  5'- gCCgGCGCCcugguccucgcAUCgCUGCgCugGCCCAGGu -3'
miRNA:   3'- -GGgCGCGG-----------UAGgGAUG-GugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16802 0.66 0.402884
Target:  5'- gCUG-GCCAg-CCUGCCG-GCCCAGGa -3'
miRNA:   3'- gGGCgCGGUagGGAUGGUgCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16872 0.67 0.35876
Target:  5'- gCCG-GCCAagUCCUUggcGCCguauucacGCGCCCAGGg -3'
miRNA:   3'- gGGCgCGGU--AGGGA---UGG--------UGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 17868 0.69 0.253936
Target:  5'- uCCgGCGCCAUCUUcugGCCAaGCCCuGGc -3'
miRNA:   3'- -GGgCGCGGUAGGGa--UGGUgCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 18572 0.69 0.274069
Target:  5'- aCCCGCGCCGaCCgUgACCAgGCgCAGa -3'
miRNA:   3'- -GGGCGCGGUaGGgA-UGGUgCGgGUUc -5'
23155 3' -59.4 NC_005178.1 + 19365 0.67 0.342082
Target:  5'- aCCCGCGCUA--CCUGCgCGggcUGCUCAAGa -3'
miRNA:   3'- -GGGCGCGGUagGGAUG-GU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 19492 0.7 0.2412
Target:  5'- uCCCGCGCCGUauaCCguCCAguuCGCCCuGGa -3'
miRNA:   3'- -GGGCGCGGUAg--GGauGGU---GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 20381 0.66 0.393787
Target:  5'- aCCGCccugaaGCCggCCCUGg-ACGCCCAGGc -3'
miRNA:   3'- gGGCG------CGGuaGGGAUggUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 20428 0.74 0.126396
Target:  5'- gCUGCGCgAaaCCCUcgGCCugGCCCAGGa -3'
miRNA:   3'- gGGCGCGgUa-GGGA--UGGugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 20870 0.72 0.166371
Target:  5'- gCCUGCGCCGg-CCUGau-CGCCCAGGa -3'
miRNA:   3'- -GGGCGCGGUagGGAUgguGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 23659 0.67 0.342082
Target:  5'- gUCCGCGCUggCCCguUCACGCCgGGc -3'
miRNA:   3'- -GGGCGCGGuaGGGauGGUGCGGgUUc -5'
23155 3' -59.4 NC_005178.1 + 23740 0.68 0.288189
Target:  5'- gUCGCGCCgaagccgaGUUCCUGCUGCGCCg--- -3'
miRNA:   3'- gGGCGCGG--------UAGGGAUGGUGCGGguuc -5'
23155 3' -59.4 NC_005178.1 + 24416 0.66 0.402884
Target:  5'- cCCUGCGCUAUaagggcaUCaACCugGCCgAAGg -3'
miRNA:   3'- -GGGCGCGGUAg------GGaUGGugCGGgUUC- -5'
23155 3' -59.4 NC_005178.1 + 27104 0.69 0.274069
Target:  5'- aUCGCGCCA-CCgUACCAgCGCCUu-- -3'
miRNA:   3'- gGGCGCGGUaGGgAUGGU-GCGGGuuc -5'
23155 3' -59.4 NC_005178.1 + 27221 0.7 0.217327
Target:  5'- -gCGCGCUucgcCCCU-CCGCGCCCGGc -3'
miRNA:   3'- ggGCGCGGua--GGGAuGGUGCGGGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.