Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23155 | 3' | -59.4 | NC_005178.1 | + | 1217 | 0.67 | 0.35876 |
Target: 5'- gCCGCGCUGgaccugagCCCUGugaagcUCugGCCCGAa -3' miRNA: 3'- gGGCGCGGUa-------GGGAU------GGugCGGGUUc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 1444 | 0.7 | 0.223099 |
Target: 5'- gCCCGCGCUAUaCCUggugagugcaACUAcgcCGCCCAGGu -3' miRNA: 3'- -GGGCGCGGUAgGGA----------UGGU---GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 2491 | 0.66 | 0.420529 |
Target: 5'- gCUGCGCUcgCCCUcgguaacGCCcugauCGCCCGc- -3' miRNA: 3'- gGGCGCGGuaGGGA-------UGGu----GCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 2711 | 0.7 | 0.2412 |
Target: 5'- aCCCGCGCCG-CgCUGCUGaacgcCGCCCuGGg -3' miRNA: 3'- -GGGCGCGGUaGgGAUGGU-----GCGGGuUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 2976 | 0.75 | 0.092811 |
Target: 5'- gCCCG-GCCAgcUCCCcggUGgCACGCCCAGGa -3' miRNA: 3'- -GGGCgCGGU--AGGG---AUgGUGCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 3887 | 0.66 | 0.384825 |
Target: 5'- aCCCGa-CCGUCUgUGCCuucgguuuaGCGCCCAu- -3' miRNA: 3'- -GGGCgcGGUAGGgAUGG---------UGCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4428 | 0.7 | 0.229 |
Target: 5'- aCCGCaGCCAccaCCCaagccACCAcCGCCCAGGu -3' miRNA: 3'- gGGCG-CGGUa--GGGa----UGGU-GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4493 | 0.69 | 0.250058 |
Target: 5'- aCCCGCaguugGCCA--CCUGCCGgaaugcccucggugcCGCCCAGGa -3' miRNA: 3'- -GGGCG-----CGGUagGGAUGGU---------------GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4809 | 0.71 | 0.195505 |
Target: 5'- aUCGcCGCCG-CgCCUACUACGUCCAGGc -3' miRNA: 3'- gGGC-GCGGUaG-GGAUGGUGCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 5654 | 0.66 | 0.384825 |
Target: 5'- aCCggcaGCGCCAUCCCgGCgACGUCgGu- -3' miRNA: 3'- -GGg---CGCGGUAGGGaUGgUGCGGgUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 7175 | 0.67 | 0.365589 |
Target: 5'- gCCGCGCCuGUCCacgcaacccgcaUACCGCcCCCAu- -3' miRNA: 3'- gGGCGCGG-UAGGg-----------AUGGUGcGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 9019 | 0.67 | 0.333151 |
Target: 5'- cUCCGCGCCGUUgccggcuucgaCCUggagcaaugccgcGCCGCGCUCGc- -3' miRNA: 3'- -GGGCGCGGUAG-----------GGA-------------UGGUGCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 9380 | 0.67 | 0.342082 |
Target: 5'- aCCGCaGCaggaaAUCCaCUacACCACGgCCAAGa -3' miRNA: 3'- gGGCG-CGg----UAGG-GA--UGGUGCgGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 9425 | 0.7 | 0.217327 |
Target: 5'- -gCGcCGCCAUCggUGCCAcCGCCCAGGc -3' miRNA: 3'- ggGC-GCGGUAGggAUGGU-GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 10042 | 0.7 | 0.2412 |
Target: 5'- aCCGCGC--UCCUgGCCAgCGCCCAu- -3' miRNA: 3'- gGGCGCGguAGGGaUGGU-GCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 10787 | 0.75 | 0.106878 |
Target: 5'- gCCGcCGCCAUCCUgGCCGaGCCCAGc -3' miRNA: 3'- gGGC-GCGGUAGGGaUGGUgCGGGUUc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 11742 | 0.68 | 0.325972 |
Target: 5'- aCCCGCGCaUAUgCCacgGCCgugGCCCGAGc -3' miRNA: 3'- -GGGCGCG-GUAgGGa--UGGug-CGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 12150 | 0.67 | 0.350351 |
Target: 5'- aCCCGCGCCua-CC-GCgACGUCCuGGa -3' miRNA: 3'- -GGGCGCGGuagGGaUGgUGCGGGuUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 12759 | 0.74 | 0.126396 |
Target: 5'- aCCCGCGaCG-CCCUgcGCCGCGCCUAc- -3' miRNA: 3'- -GGGCGCgGUaGGGA--UGGUGCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 13154 | 0.66 | 0.393787 |
Target: 5'- aUCCGUgaGCgGUUCCcGCagCACGCCCAGGc -3' miRNA: 3'- -GGGCG--CGgUAGGGaUG--GUGCGGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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