miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 3' -59.4 NC_005178.1 + 34714 0.67 0.333956
Target:  5'- aCCCgGCGCggCAUCCCUgaaACCGuCGUUCGGGu -3'
miRNA:   3'- -GGG-CGCG--GUAGGGA---UGGU-GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 34522 0.7 0.235034
Target:  5'- aCCaggGCGCCAcgCUCgGCCugGUCCAGGa -3'
miRNA:   3'- -GGg--CGCGGUa-GGGaUGGugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 32267 0.66 0.412112
Target:  5'- gCUCGCGCCggCCCUgaacgguggcgGCCuCGgCCAAc -3'
miRNA:   3'- -GGGCGCGGuaGGGA-----------UGGuGCgGGUUc -5'
23155 3' -59.4 NC_005178.1 + 31588 0.66 0.393787
Target:  5'- aCCGcCGCCggCCUggACCugGUCCGc- -3'
miRNA:   3'- gGGC-GCGGuaGGGa-UGGugCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 31303 0.67 0.342082
Target:  5'- aCCCaGCGCCGggcuaugcgCCUggcGCCGCGCCgGGa -3'
miRNA:   3'- -GGG-CGCGGUa--------GGGa--UGGUGCGGgUUc -5'
23155 3' -59.4 NC_005178.1 + 29252 0.66 0.42147
Target:  5'- gCCgGCGCCGgcuucaUCCUGCCACcuuGUCCGc- -3'
miRNA:   3'- -GGgCGCGGUa-----GGGAUGGUG---CGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 28961 0.68 0.295461
Target:  5'- gCCgUGCGCCAggugaCCCUG-CGCGCCCcuGg -3'
miRNA:   3'- -GG-GCGCGGUa----GGGAUgGUGCGGGuuC- -5'
23155 3' -59.4 NC_005178.1 + 28645 0.72 0.175622
Target:  5'- gCCGgGCCGaUCCUG-CugGCCCAGGg -3'
miRNA:   3'- gGGCgCGGUaGGGAUgGugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 28589 1.09 0.000269
Target:  5'- uCCCGCGCCAUCCCUACCACGCCCAAGc -3'
miRNA:   3'- -GGGCGCGGUAGGGAUGGUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 27221 0.7 0.217327
Target:  5'- -gCGCGCUucgcCCCU-CCGCGCCCGGc -3'
miRNA:   3'- ggGCGCGGua--GGGAuGGUGCGGGUUc -5'
23155 3' -59.4 NC_005178.1 + 27104 0.69 0.274069
Target:  5'- aUCGCGCCA-CCgUACCAgCGCCUu-- -3'
miRNA:   3'- gGGCGCGGUaGGgAUGGU-GCGGGuuc -5'
23155 3' -59.4 NC_005178.1 + 24416 0.66 0.402884
Target:  5'- cCCUGCGCUAUaagggcaUCaACCugGCCgAAGg -3'
miRNA:   3'- -GGGCGCGGUAg------GGaUGGugCGGgUUC- -5'
23155 3' -59.4 NC_005178.1 + 23740 0.68 0.288189
Target:  5'- gUCGCGCCgaagccgaGUUCCUGCUGCGCCg--- -3'
miRNA:   3'- gGGCGCGG--------UAGGGAUGGUGCGGguuc -5'
23155 3' -59.4 NC_005178.1 + 23659 0.67 0.342082
Target:  5'- gUCCGCGCUggCCCguUCACGCCgGGc -3'
miRNA:   3'- -GGGCGCGGuaGGGauGGUGCGGgUUc -5'
23155 3' -59.4 NC_005178.1 + 20870 0.72 0.166371
Target:  5'- gCCUGCGCCGg-CCUGau-CGCCCAGGa -3'
miRNA:   3'- -GGGCGCGGUagGGAUgguGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 20428 0.74 0.126396
Target:  5'- gCUGCGCgAaaCCCUcgGCCugGCCCAGGa -3'
miRNA:   3'- gGGCGCGgUa-GGGA--UGGugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 20381 0.66 0.393787
Target:  5'- aCCGCccugaaGCCggCCCUGg-ACGCCCAGGc -3'
miRNA:   3'- gGGCG------CGGuaGGGAUggUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 19492 0.7 0.2412
Target:  5'- uCCCGCGCCGUauaCCguCCAguuCGCCCuGGa -3'
miRNA:   3'- -GGGCGCGGUAg--GGauGGU---GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 19365 0.67 0.342082
Target:  5'- aCCCGCGCUA--CCUGCgCGggcUGCUCAAGa -3'
miRNA:   3'- -GGGCGCGGUagGGAUG-GU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 18572 0.69 0.274069
Target:  5'- aCCCGCGCCGaCCgUgACCAgGCgCAGa -3'
miRNA:   3'- -GGGCGCGGUaGGgA-UGGUgCGgGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.