miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 3' -59.4 NC_005178.1 + 17868 0.69 0.253936
Target:  5'- uCCgGCGCCAUCUUcugGCCAaGCCCuGGc -3'
miRNA:   3'- -GGgCGCGGUAGGGa--UGGUgCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 16872 0.67 0.35876
Target:  5'- gCCG-GCCAagUCCUUggcGCCguauucacGCGCCCAGGg -3'
miRNA:   3'- gGGCgCGGU--AGGGA---UGG--------UGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16802 0.66 0.402884
Target:  5'- gCUG-GCCAg-CCUGCCG-GCCCAGGa -3'
miRNA:   3'- gGGCgCGGUagGGAUGGUgCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16720 0.71 0.190357
Target:  5'- gCCgGCGCCcugguccucgcAUCgCUGCgCugGCCCAGGu -3'
miRNA:   3'- -GGgCGCGG-----------UAGgGAUG-GugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16525 0.67 0.375998
Target:  5'- gCCGCGCC--CCCcGCCugGUCUucGa -3'
miRNA:   3'- gGGCGCGGuaGGGaUGGugCGGGuuC- -5'
23155 3' -59.4 NC_005178.1 + 16485 0.69 0.250058
Target:  5'- aUCCGCGCCAUUgCgguuguCCACguauuccucagcgcgGCCCAGGu -3'
miRNA:   3'- -GGGCGCGGUAGgGau----GGUG---------------CGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 15247 0.67 0.342082
Target:  5'- gCUGCGCCAcuUCCCggccgcagACCACGacgauggcCCCGAc -3'
miRNA:   3'- gGGCGCGGU--AGGGa-------UGGUGC--------GGGUUc -5'
23155 3' -59.4 NC_005178.1 + 14185 0.67 0.35876
Target:  5'- gCCCGacuGCCG-CCCUgguGCgACGCCCcGGu -3'
miRNA:   3'- -GGGCg--CGGUaGGGA---UGgUGCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 14097 0.74 0.122928
Target:  5'- uUCGCGCCGggcgCCCUgGCCGuCGCCCuGGg -3'
miRNA:   3'- gGGCGCGGUa---GGGA-UGGU-GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 13154 0.66 0.393787
Target:  5'- aUCCGUgaGCgGUUCCcGCagCACGCCCAGGc -3'
miRNA:   3'- -GGGCG--CGgUAGGGaUG--GUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 12759 0.74 0.126396
Target:  5'- aCCCGCGaCG-CCCUgcGCCGCGCCUAc- -3'
miRNA:   3'- -GGGCGCgGUaGGGA--UGGUGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 12150 0.67 0.350351
Target:  5'- aCCCGCGCCua-CC-GCgACGUCCuGGa -3'
miRNA:   3'- -GGGCGCGGuagGGaUGgUGCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 11742 0.68 0.325972
Target:  5'- aCCCGCGCaUAUgCCacgGCCgugGCCCGAGc -3'
miRNA:   3'- -GGGCGCG-GUAgGGa--UGGug-CGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 10787 0.75 0.106878
Target:  5'- gCCGcCGCCAUCCUgGCCGaGCCCAGc -3'
miRNA:   3'- gGGC-GCGGUAGGGaUGGUgCGGGUUc -5'
23155 3' -59.4 NC_005178.1 + 10042 0.7 0.2412
Target:  5'- aCCGCGC--UCCUgGCCAgCGCCCAu- -3'
miRNA:   3'- gGGCGCGguAGGGaUGGU-GCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 9425 0.7 0.217327
Target:  5'- -gCGcCGCCAUCggUGCCAcCGCCCAGGc -3'
miRNA:   3'- ggGC-GCGGUAGggAUGGU-GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 9380 0.67 0.342082
Target:  5'- aCCGCaGCaggaaAUCCaCUacACCACGgCCAAGa -3'
miRNA:   3'- gGGCG-CGg----UAGG-GA--UGGUGCgGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 9019 0.67 0.333151
Target:  5'- cUCCGCGCCGUUgccggcuucgaCCUggagcaaugccgcGCCGCGCUCGc- -3'
miRNA:   3'- -GGGCGCGGUAG-----------GGA-------------UGGUGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 7175 0.67 0.365589
Target:  5'- gCCGCGCCuGUCCacgcaacccgcaUACCGCcCCCAu- -3'
miRNA:   3'- gGGCGCGG-UAGGg-----------AUGGUGcGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 5654 0.66 0.384825
Target:  5'- aCCggcaGCGCCAUCCCgGCgACGUCgGu- -3'
miRNA:   3'- -GGg---CGCGGUAGGGaUGgUGCGGgUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.