miRNA display CGI


Results 41 - 49 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 3' -59.4 NC_005178.1 + 4809 0.71 0.195505
Target:  5'- aUCGcCGCCG-CgCCUACUACGUCCAGGc -3'
miRNA:   3'- gGGC-GCGGUaG-GGAUGGUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 4493 0.69 0.250058
Target:  5'- aCCCGCaguugGCCA--CCUGCCGgaaugcccucggugcCGCCCAGGa -3'
miRNA:   3'- -GGGCG-----CGGUagGGAUGGU---------------GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 4428 0.7 0.229
Target:  5'- aCCGCaGCCAccaCCCaagccACCAcCGCCCAGGu -3'
miRNA:   3'- gGGCG-CGGUa--GGGa----UGGU-GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 3887 0.66 0.384825
Target:  5'- aCCCGa-CCGUCUgUGCCuucgguuuaGCGCCCAu- -3'
miRNA:   3'- -GGGCgcGGUAGGgAUGG---------UGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 2976 0.75 0.092811
Target:  5'- gCCCG-GCCAgcUCCCcggUGgCACGCCCAGGa -3'
miRNA:   3'- -GGGCgCGGU--AGGG---AUgGUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 2711 0.7 0.2412
Target:  5'- aCCCGCGCCG-CgCUGCUGaacgcCGCCCuGGg -3'
miRNA:   3'- -GGGCGCGGUaGgGAUGGU-----GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 2491 0.66 0.420529
Target:  5'- gCUGCGCUcgCCCUcgguaacGCCcugauCGCCCGc- -3'
miRNA:   3'- gGGCGCGGuaGGGA-------UGGu----GCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 1444 0.7 0.223099
Target:  5'- gCCCGCGCUAUaCCUggugagugcaACUAcgcCGCCCAGGu -3'
miRNA:   3'- -GGGCGCGGUAgGGA----------UGGU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 1217 0.67 0.35876
Target:  5'- gCCGCGCUGgaccugagCCCUGugaagcUCugGCCCGAa -3'
miRNA:   3'- gGGCGCGGUa-------GGGAU------GGugCGGGUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.