Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23155 | 3' | -59.4 | NC_005178.1 | + | 4809 | 0.71 | 0.195505 |
Target: 5'- aUCGcCGCCG-CgCCUACUACGUCCAGGc -3' miRNA: 3'- gGGC-GCGGUaG-GGAUGGUGCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4493 | 0.69 | 0.250058 |
Target: 5'- aCCCGCaguugGCCA--CCUGCCGgaaugcccucggugcCGCCCAGGa -3' miRNA: 3'- -GGGCG-----CGGUagGGAUGGU---------------GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 4428 | 0.7 | 0.229 |
Target: 5'- aCCGCaGCCAccaCCCaagccACCAcCGCCCAGGu -3' miRNA: 3'- gGGCG-CGGUa--GGGa----UGGU-GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 3887 | 0.66 | 0.384825 |
Target: 5'- aCCCGa-CCGUCUgUGCCuucgguuuaGCGCCCAu- -3' miRNA: 3'- -GGGCgcGGUAGGgAUGG---------UGCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 2976 | 0.75 | 0.092811 |
Target: 5'- gCCCG-GCCAgcUCCCcggUGgCACGCCCAGGa -3' miRNA: 3'- -GGGCgCGGU--AGGG---AUgGUGCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 2711 | 0.7 | 0.2412 |
Target: 5'- aCCCGCGCCG-CgCUGCUGaacgcCGCCCuGGg -3' miRNA: 3'- -GGGCGCGGUaGgGAUGGU-----GCGGGuUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 2491 | 0.66 | 0.420529 |
Target: 5'- gCUGCGCUcgCCCUcgguaacGCCcugauCGCCCGc- -3' miRNA: 3'- gGGCGCGGuaGGGA-------UGGu----GCGGGUuc -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 1444 | 0.7 | 0.223099 |
Target: 5'- gCCCGCGCUAUaCCUggugagugcaACUAcgcCGCCCAGGu -3' miRNA: 3'- -GGGCGCGGUAgGGA----------UGGU---GCGGGUUC- -5' |
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23155 | 3' | -59.4 | NC_005178.1 | + | 1217 | 0.67 | 0.35876 |
Target: 5'- gCCGCGCUGgaccugagCCCUGugaagcUCugGCCCGAa -3' miRNA: 3'- gGGCGCGGUa-------GGGAU------GGugCGGGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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