Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23158 | 3' | -60.8 | NC_005178.1 | + | 6237 | 0.66 | 0.342082 |
Target: 5'- ---cCGGC-GCGGCGCCaGGCGCa-- -3' miRNA: 3'- accaGCCGuCGCUGUGGaCCGCGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 9612 | 0.66 | 0.333956 |
Target: 5'- aGGUCuGGCccGCGACGucCCUGGCGgaGUc -3' miRNA: 3'- aCCAG-CCGu-CGCUGU--GGACCGCg-CAc -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 34503 | 0.66 | 0.333956 |
Target: 5'- cGGgCGGCGGaccuuCGGCACCagGGCGCc-- -3' miRNA: 3'- aCCaGCCGUC-----GCUGUGGa-CCGCGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 16826 | 0.66 | 0.333151 |
Target: 5'- gGGUCagGGCGGCGAUgggcuugGCCUGGCcCa-- -3' miRNA: 3'- aCCAG--CCGUCGCUG-------UGGACCGcGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 14845 | 0.66 | 0.325972 |
Target: 5'- aUGGcacUCGGCAGCGAC-CC-GGCGa--- -3' miRNA: 3'- -ACC---AGCCGUCGCUGuGGaCCGCgcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 14376 | 0.66 | 0.31813 |
Target: 5'- cGGcUCGGCAGUGcuCACCaGGUGCc-- -3' miRNA: 3'- aCC-AGCCGUCGCu-GUGGaCCGCGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 16375 | 0.66 | 0.302875 |
Target: 5'- cGGgCGGCGGCGccuACGcCCUGGgGCa-- -3' miRNA: 3'- aCCaGCCGUCGC---UGU-GGACCgCGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 12097 | 0.67 | 0.295461 |
Target: 5'- gUGGUCGcGUGGCGG-GCCUGGC-CGaUGg -3' miRNA: 3'- -ACCAGC-CGUCGCUgUGGACCGcGC-AC- -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 5550 | 0.67 | 0.288189 |
Target: 5'- gGGUCGGCacccauAGCGGcuuCugCUGGcCGCGc- -3' miRNA: 3'- aCCAGCCG------UCGCU---GugGACC-GCGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 28116 | 0.67 | 0.28747 |
Target: 5'- gGGUUuggccugGGCGGUGGCACCgaUGGCgGCGc- -3' miRNA: 3'- aCCAG-------CCGUCGCUGUGG--ACCG-CGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 28705 | 0.67 | 0.281059 |
Target: 5'- cGGUCGGUGGCGucggggcucACACCcGGCacGCGc- -3' miRNA: 3'- aCCAGCCGUCGC---------UGUGGaCCG--CGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 17529 | 0.67 | 0.274069 |
Target: 5'- cGGcCGGCAGCgGGCGCgggCUGGC-CGUu -3' miRNA: 3'- aCCaGCCGUCG-CUGUG---GACCGcGCAc -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 17897 | 0.67 | 0.260509 |
Target: 5'- cGGUaCGcCAGCG-CGCCUGGCagGCGUu -3' miRNA: 3'- aCCA-GCcGUCGCuGUGGACCG--CGCAc -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 13163 | 0.67 | 0.260509 |
Target: 5'- cGGUCGGCuGCGGCgcggugaacauGCCcaccugcuuggUGGCgGCGUa -3' miRNA: 3'- aCCAGCCGuCGCUG-----------UGG-----------ACCG-CGCAc -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 26180 | 0.68 | 0.253936 |
Target: 5'- cGGcgCGGCGGUGGcCGCUgcgGGCGUGg- -3' miRNA: 3'- aCCa-GCCGUCGCU-GUGGa--CCGCGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 9524 | 0.68 | 0.253936 |
Target: 5'- ---cCGcCAGCGcCGCCUGGCGCGg- -3' miRNA: 3'- accaGCcGUCGCuGUGGACCGCGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 31055 | 0.68 | 0.253936 |
Target: 5'- cGGU-GGCGGCgGugACCUGGC-CGa- -3' miRNA: 3'- aCCAgCCGUCG-CugUGGACCGcGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 21132 | 0.68 | 0.2475 |
Target: 5'- gUGGgcgaacgaCGGCAGCGuCACCcaGGCGCa-- -3' miRNA: 3'- -ACCa-------GCCGUCGCuGUGGa-CCGCGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 18990 | 0.68 | 0.227216 |
Target: 5'- cGGUCGGCgcggguugugaucgAGCG-CGCCagGGCGUugGUGa -3' miRNA: 3'- aCCAGCCG--------------UCGCuGUGGa-CCGCG--CAC- -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 9315 | 0.68 | 0.223099 |
Target: 5'- aGG-CGGCAGCG--GCCUGGauaGCGg- -3' miRNA: 3'- aCCaGCCGUCGCugUGGACCg--CGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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