miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 3' -60.8 NC_005178.1 + 6237 0.66 0.342082
Target:  5'- ---cCGGC-GCGGCGCCaGGCGCa-- -3'
miRNA:   3'- accaGCCGuCGCUGUGGaCCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 34503 0.66 0.333956
Target:  5'- cGGgCGGCGGaccuuCGGCACCagGGCGCc-- -3'
miRNA:   3'- aCCaGCCGUC-----GCUGUGGa-CCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 9612 0.66 0.333956
Target:  5'- aGGUCuGGCccGCGACGucCCUGGCGgaGUc -3'
miRNA:   3'- aCCAG-CCGu-CGCUGU--GGACCGCg-CAc -5'
23158 3' -60.8 NC_005178.1 + 16826 0.66 0.333151
Target:  5'- gGGUCagGGCGGCGAUgggcuugGCCUGGCcCa-- -3'
miRNA:   3'- aCCAG--CCGUCGCUG-------UGGACCGcGcac -5'
23158 3' -60.8 NC_005178.1 + 14845 0.66 0.325972
Target:  5'- aUGGcacUCGGCAGCGAC-CC-GGCGa--- -3'
miRNA:   3'- -ACC---AGCCGUCGCUGuGGaCCGCgcac -5'
23158 3' -60.8 NC_005178.1 + 14376 0.66 0.31813
Target:  5'- cGGcUCGGCAGUGcuCACCaGGUGCc-- -3'
miRNA:   3'- aCC-AGCCGUCGCu-GUGGaCCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 16375 0.66 0.302875
Target:  5'- cGGgCGGCGGCGccuACGcCCUGGgGCa-- -3'
miRNA:   3'- aCCaGCCGUCGC---UGU-GGACCgCGcac -5'
23158 3' -60.8 NC_005178.1 + 12097 0.67 0.295461
Target:  5'- gUGGUCGcGUGGCGG-GCCUGGC-CGaUGg -3'
miRNA:   3'- -ACCAGC-CGUCGCUgUGGACCGcGC-AC- -5'
23158 3' -60.8 NC_005178.1 + 5550 0.67 0.288189
Target:  5'- gGGUCGGCacccauAGCGGcuuCugCUGGcCGCGc- -3'
miRNA:   3'- aCCAGCCG------UCGCU---GugGACC-GCGCac -5'
23158 3' -60.8 NC_005178.1 + 28116 0.67 0.28747
Target:  5'- gGGUUuggccugGGCGGUGGCACCgaUGGCgGCGc- -3'
miRNA:   3'- aCCAG-------CCGUCGCUGUGG--ACCG-CGCac -5'
23158 3' -60.8 NC_005178.1 + 28705 0.67 0.281059
Target:  5'- cGGUCGGUGGCGucggggcucACACCcGGCacGCGc- -3'
miRNA:   3'- aCCAGCCGUCGC---------UGUGGaCCG--CGCac -5'
23158 3' -60.8 NC_005178.1 + 17529 0.67 0.274069
Target:  5'- cGGcCGGCAGCgGGCGCgggCUGGC-CGUu -3'
miRNA:   3'- aCCaGCCGUCG-CUGUG---GACCGcGCAc -5'
23158 3' -60.8 NC_005178.1 + 13163 0.67 0.260509
Target:  5'- cGGUCGGCuGCGGCgcggugaacauGCCcaccugcuuggUGGCgGCGUa -3'
miRNA:   3'- aCCAGCCGuCGCUG-----------UGG-----------ACCG-CGCAc -5'
23158 3' -60.8 NC_005178.1 + 17897 0.67 0.260509
Target:  5'- cGGUaCGcCAGCG-CGCCUGGCagGCGUu -3'
miRNA:   3'- aCCA-GCcGUCGCuGUGGACCG--CGCAc -5'
23158 3' -60.8 NC_005178.1 + 26180 0.68 0.253936
Target:  5'- cGGcgCGGCGGUGGcCGCUgcgGGCGUGg- -3'
miRNA:   3'- aCCa-GCCGUCGCU-GUGGa--CCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 9524 0.68 0.253936
Target:  5'- ---cCGcCAGCGcCGCCUGGCGCGg- -3'
miRNA:   3'- accaGCcGUCGCuGUGGACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 31055 0.68 0.253936
Target:  5'- cGGU-GGCGGCgGugACCUGGC-CGa- -3'
miRNA:   3'- aCCAgCCGUCG-CugUGGACCGcGCac -5'
23158 3' -60.8 NC_005178.1 + 21132 0.68 0.2475
Target:  5'- gUGGgcgaacgaCGGCAGCGuCACCcaGGCGCa-- -3'
miRNA:   3'- -ACCa-------GCCGUCGCuGUGGa-CCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 18990 0.68 0.227216
Target:  5'- cGGUCGGCgcggguugugaucgAGCG-CGCCagGGCGUugGUGa -3'
miRNA:   3'- aCCAGCCG--------------UCGCuGUGGa-CCGCG--CAC- -5'
23158 3' -60.8 NC_005178.1 + 26899 0.68 0.223099
Target:  5'- gGGUCGGCGcggaGACGCCggccGGgGCGUu -3'
miRNA:   3'- aCCAGCCGUcg--CUGUGGa---CCgCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.