miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 3' -60.8 NC_005178.1 + 30582 1.07 0.000225
Target:  5'- gUGGUCGGCAGCGACACCUGGCGCGUGu -3'
miRNA:   3'- -ACCAGCCGUCGCUGUGGACCGCGCAC- -5'
23158 3' -60.8 NC_005178.1 + 16375 0.66 0.302875
Target:  5'- cGGgCGGCGGCGccuACGcCCUGGgGCa-- -3'
miRNA:   3'- aCCaGCCGUCGC---UGU-GGACCgCGcac -5'
23158 3' -60.8 NC_005178.1 + 12097 0.67 0.295461
Target:  5'- gUGGUCGcGUGGCGG-GCCUGGC-CGaUGg -3'
miRNA:   3'- -ACCAGC-CGUCGCUgUGGACCGcGC-AC- -5'
23158 3' -60.8 NC_005178.1 + 28116 0.67 0.28747
Target:  5'- gGGUUuggccugGGCGGUGGCACCgaUGGCgGCGc- -3'
miRNA:   3'- aCCAG-------CCGUCGCUGUGG--ACCG-CGCac -5'
23158 3' -60.8 NC_005178.1 + 17897 0.67 0.260509
Target:  5'- cGGUaCGcCAGCG-CGCCUGGCagGCGUu -3'
miRNA:   3'- aCCA-GCcGUCGCuGUGGACCG--CGCAc -5'
23158 3' -60.8 NC_005178.1 + 26180 0.68 0.253936
Target:  5'- cGGcgCGGCGGUGGcCGCUgcgGGCGUGg- -3'
miRNA:   3'- aCCa-GCCGUCGCU-GUGGa--CCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 9524 0.68 0.253936
Target:  5'- ---cCGcCAGCGcCGCCUGGCGCGg- -3'
miRNA:   3'- accaGCcGUCGCuGUGGACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 21132 0.68 0.2475
Target:  5'- gUGGgcgaacgaCGGCAGCGuCACCcaGGCGCa-- -3'
miRNA:   3'- -ACCa-------GCCGUCGCuGUGGa-CCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 10373 0.69 0.206166
Target:  5'- cUGGUgGGCAGCGACAUCgaGGaGCa-- -3'
miRNA:   3'- -ACCAgCCGUCGCUGUGGa-CCgCGcac -5'
23158 3' -60.8 NC_005178.1 + 28189 0.69 0.195505
Target:  5'- cGGcCGGCgcccuGGCGACugCUGGCgGCa-- -3'
miRNA:   3'- aCCaGCCG-----UCGCUGugGACCG-CGcac -5'
23158 3' -60.8 NC_005178.1 + 35040 0.69 0.195505
Target:  5'- cGcGUCGGCAGC----UCUGGCGCGUu -3'
miRNA:   3'- aC-CAGCCGUCGcuguGGACCGCGCAc -5'
23158 3' -60.8 NC_005178.1 + 11927 0.7 0.175622
Target:  5'- cGGUUGGCAGCaacuaaaggccGCACuCUGGUugGCGUGa -3'
miRNA:   3'- aCCAGCCGUCGc----------UGUG-GACCG--CGCAC- -5'
23158 3' -60.8 NC_005178.1 + 8814 0.75 0.071809
Target:  5'- aGGUCGGCaAGaaaGuCGCCcGGCGCGUGc -3'
miRNA:   3'- aCCAGCCG-UCg--CuGUGGaCCGCGCAC- -5'
23158 3' -60.8 NC_005178.1 + 12652 0.8 0.029187
Target:  5'- cGGcUCGGCGGcCGGCGCgCUGGCGgGUGg -3'
miRNA:   3'- aCC-AGCCGUC-GCUGUG-GACCGCgCAC- -5'
23158 3' -60.8 NC_005178.1 + 8977 0.69 0.200241
Target:  5'- aUGG-CGGggaaugcCGGCGACGCCcccggUGGCGCGg- -3'
miRNA:   3'- -ACCaGCC-------GUCGCUGUGG-----ACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 24604 0.7 0.170941
Target:  5'- gGGUCaccaGGcCGGCcaGCACCUGGCGCGc- -3'
miRNA:   3'- aCCAG----CC-GUCGc-UGUGGACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 8585 0.7 0.166371
Target:  5'- aGGggCGcGCAGgGuCACCUGGCGCa-- -3'
miRNA:   3'- aCCa-GC-CGUCgCuGUGGACCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 33096 0.71 0.145132
Target:  5'- cGGUCGGCAGgGugAagaCCUGG-GCGgUGg -3'
miRNA:   3'- aCCAGCCGUCgCugU---GGACCgCGC-AC- -5'
23158 3' -60.8 NC_005178.1 + 393 0.72 0.116256
Target:  5'- gGGUCGGacucgguGCGAUagGCCUGGCgGCGUa -3'
miRNA:   3'- aCCAGCCgu-----CGCUG--UGGACCG-CGCAc -5'
23158 3' -60.8 NC_005178.1 + 6237 0.66 0.342082
Target:  5'- ---cCGGC-GCGGCGCCaGGCGCa-- -3'
miRNA:   3'- accaGCCGuCGCUGUGGaCCGCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.