miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 3' -60.8 NC_005178.1 + 16826 0.66 0.333151
Target:  5'- gGGUCagGGCGGCGAUgggcuugGCCUGGCcCa-- -3'
miRNA:   3'- aCCAG--CCGUCGCUG-------UGGACCGcGcac -5'
23158 3' -60.8 NC_005178.1 + 9612 0.66 0.333956
Target:  5'- aGGUCuGGCccGCGACGucCCUGGCGgaGUc -3'
miRNA:   3'- aCCAG-CCGu-CGCUGU--GGACCGCg-CAc -5'
23158 3' -60.8 NC_005178.1 + 34503 0.66 0.333956
Target:  5'- cGGgCGGCGGaccuuCGGCACCagGGCGCc-- -3'
miRNA:   3'- aCCaGCCGUC-----GCUGUGGa-CCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 31055 0.68 0.253936
Target:  5'- cGGU-GGCGGCgGugACCUGGC-CGa- -3'
miRNA:   3'- aCCAgCCGUCG-CugUGGACCGcGCac -5'
23158 3' -60.8 NC_005178.1 + 18990 0.68 0.227216
Target:  5'- cGGUCGGCgcggguugugaucgAGCG-CGCCagGGCGUugGUGa -3'
miRNA:   3'- aCCAGCCG--------------UCGCuGUGGa-CCGCG--CAC- -5'
23158 3' -60.8 NC_005178.1 + 6484 0.77 0.051396
Target:  5'- aGGgcagcaaaacccagCGGCGGCGACGCCUGGCcagacaGCGUa -3'
miRNA:   3'- aCCa-------------GCCGUCGCUGUGGACCG------CGCAc -5'
23158 3' -60.8 NC_005178.1 + 393 0.72 0.116256
Target:  5'- gGGUCGGacucgguGCGAUagGCCUGGCgGCGUa -3'
miRNA:   3'- aCCAGCCgu-----CGCUG--UGGACCG-CGCAc -5'
23158 3' -60.8 NC_005178.1 + 33096 0.71 0.145132
Target:  5'- cGGUCGGCAGgGugAagaCCUGG-GCGgUGg -3'
miRNA:   3'- aCCAGCCGUCgCugU---GGACCgCGC-AC- -5'
23158 3' -60.8 NC_005178.1 + 8585 0.7 0.166371
Target:  5'- aGGggCGcGCAGgGuCACCUGGCGCa-- -3'
miRNA:   3'- aCCa-GC-CGUCgCuGUGGACCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 24604 0.7 0.170941
Target:  5'- gGGUCaccaGGcCGGCcaGCACCUGGCGCGc- -3'
miRNA:   3'- aCCAG----CC-GUCGc-UGUGGACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 8977 0.69 0.200241
Target:  5'- aUGG-CGGggaaugcCGGCGACGCCcccggUGGCGCGg- -3'
miRNA:   3'- -ACCaGCC-------GUCGCUGUGG-----ACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 5316 0.69 0.216757
Target:  5'- cGGUCGGCucgaccaGGCGGC-CCagGGCgGCGUc -3'
miRNA:   3'- aCCAGCCG-------UCGCUGuGGa-CCG-CGCAc -5'
23158 3' -60.8 NC_005178.1 + 9315 0.68 0.223099
Target:  5'- aGG-CGGCAGCG--GCCUGGauaGCGg- -3'
miRNA:   3'- aCCaGCCGUCGCugUGGACCg--CGCac -5'
23158 3' -60.8 NC_005178.1 + 26899 0.68 0.223099
Target:  5'- gGGUCGGCGcggaGACGCCggccGGgGCGUu -3'
miRNA:   3'- aCCAGCCGUcg--CUGUGGa---CCgCGCAc -5'
23158 3' -60.8 NC_005178.1 + 6237 0.66 0.342082
Target:  5'- ---cCGGC-GCGGCGCCaGGCGCa-- -3'
miRNA:   3'- accaGCCGuCGCUGUGGaCCGCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.