Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23158 | 3' | -60.8 | NC_005178.1 | + | 17529 | 0.67 | 0.274069 |
Target: 5'- cGGcCGGCAGCgGGCGCgggCUGGC-CGUu -3' miRNA: 3'- aCCaGCCGUCG-CUGUG---GACCGcGCAc -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 17897 | 0.67 | 0.260509 |
Target: 5'- cGGUaCGcCAGCG-CGCCUGGCagGCGUu -3' miRNA: 3'- aCCA-GCcGUCGCuGUGGACCG--CGCAc -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 18990 | 0.68 | 0.227216 |
Target: 5'- cGGUCGGCgcggguugugaucgAGCG-CGCCagGGCGUugGUGa -3' miRNA: 3'- aCCAGCCG--------------UCGCuGUGGa-CCGCG--CAC- -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 21132 | 0.68 | 0.2475 |
Target: 5'- gUGGgcgaacgaCGGCAGCGuCACCcaGGCGCa-- -3' miRNA: 3'- -ACCa-------GCCGUCGCuGUGGa-CCGCGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 24604 | 0.7 | 0.170941 |
Target: 5'- gGGUCaccaGGcCGGCcaGCACCUGGCGCGc- -3' miRNA: 3'- aCCAG----CC-GUCGc-UGUGGACCGCGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 26180 | 0.68 | 0.253936 |
Target: 5'- cGGcgCGGCGGUGGcCGCUgcgGGCGUGg- -3' miRNA: 3'- aCCa-GCCGUCGCU-GUGGa--CCGCGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 26899 | 0.68 | 0.223099 |
Target: 5'- gGGUCGGCGcggaGACGCCggccGGgGCGUu -3' miRNA: 3'- aCCAGCCGUcg--CUGUGGa---CCgCGCAc -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 28116 | 0.67 | 0.28747 |
Target: 5'- gGGUUuggccugGGCGGUGGCACCgaUGGCgGCGc- -3' miRNA: 3'- aCCAG-------CCGUCGCUGUGG--ACCG-CGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 28189 | 0.69 | 0.195505 |
Target: 5'- cGGcCGGCgcccuGGCGACugCUGGCgGCa-- -3' miRNA: 3'- aCCaGCCG-----UCGCUGugGACCG-CGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 28705 | 0.67 | 0.281059 |
Target: 5'- cGGUCGGUGGCGucggggcucACACCcGGCacGCGc- -3' miRNA: 3'- aCCAGCCGUCGC---------UGUGGaCCG--CGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 30582 | 1.07 | 0.000225 |
Target: 5'- gUGGUCGGCAGCGACACCUGGCGCGUGu -3' miRNA: 3'- -ACCAGCCGUCGCUGUGGACCGCGCAC- -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 31055 | 0.68 | 0.253936 |
Target: 5'- cGGU-GGCGGCgGugACCUGGC-CGa- -3' miRNA: 3'- aCCAgCCGUCG-CugUGGACCGcGCac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 33096 | 0.71 | 0.145132 |
Target: 5'- cGGUCGGCAGgGugAagaCCUGG-GCGgUGg -3' miRNA: 3'- aCCAGCCGUCgCugU---GGACCgCGC-AC- -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 34503 | 0.66 | 0.333956 |
Target: 5'- cGGgCGGCGGaccuuCGGCACCagGGCGCc-- -3' miRNA: 3'- aCCaGCCGUC-----GCUGUGGa-CCGCGcac -5' |
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23158 | 3' | -60.8 | NC_005178.1 | + | 35040 | 0.69 | 0.195505 |
Target: 5'- cGcGUCGGCAGC----UCUGGCGCGUu -3' miRNA: 3'- aC-CAGCCGUCGcuguGGACCGCGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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