miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 3' -60.8 NC_005178.1 + 393 0.72 0.116256
Target:  5'- gGGUCGGacucgguGCGAUagGCCUGGCgGCGUa -3'
miRNA:   3'- aCCAGCCgu-----CGCUG--UGGACCG-CGCAc -5'
23158 3' -60.8 NC_005178.1 + 5316 0.69 0.216757
Target:  5'- cGGUCGGCucgaccaGGCGGC-CCagGGCgGCGUc -3'
miRNA:   3'- aCCAGCCG-------UCGCUGuGGa-CCG-CGCAc -5'
23158 3' -60.8 NC_005178.1 + 5550 0.67 0.288189
Target:  5'- gGGUCGGCacccauAGCGGcuuCugCUGGcCGCGc- -3'
miRNA:   3'- aCCAGCCG------UCGCU---GugGACC-GCGCac -5'
23158 3' -60.8 NC_005178.1 + 6237 0.66 0.342082
Target:  5'- ---cCGGC-GCGGCGCCaGGCGCa-- -3'
miRNA:   3'- accaGCCGuCGCUGUGGaCCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 6484 0.77 0.051396
Target:  5'- aGGgcagcaaaacccagCGGCGGCGACGCCUGGCcagacaGCGUa -3'
miRNA:   3'- aCCa-------------GCCGUCGCUGUGGACCG------CGCAc -5'
23158 3' -60.8 NC_005178.1 + 8585 0.7 0.166371
Target:  5'- aGGggCGcGCAGgGuCACCUGGCGCa-- -3'
miRNA:   3'- aCCa-GC-CGUCgCuGUGGACCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 8814 0.75 0.071809
Target:  5'- aGGUCGGCaAGaaaGuCGCCcGGCGCGUGc -3'
miRNA:   3'- aCCAGCCG-UCg--CuGUGGaCCGCGCAC- -5'
23158 3' -60.8 NC_005178.1 + 8977 0.69 0.200241
Target:  5'- aUGG-CGGggaaugcCGGCGACGCCcccggUGGCGCGg- -3'
miRNA:   3'- -ACCaGCC-------GUCGCUGUGG-----ACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 9315 0.68 0.223099
Target:  5'- aGG-CGGCAGCG--GCCUGGauaGCGg- -3'
miRNA:   3'- aCCaGCCGUCGCugUGGACCg--CGCac -5'
23158 3' -60.8 NC_005178.1 + 9524 0.68 0.253936
Target:  5'- ---cCGcCAGCGcCGCCUGGCGCGg- -3'
miRNA:   3'- accaGCcGUCGCuGUGGACCGCGCac -5'
23158 3' -60.8 NC_005178.1 + 9612 0.66 0.333956
Target:  5'- aGGUCuGGCccGCGACGucCCUGGCGgaGUc -3'
miRNA:   3'- aCCAG-CCGu-CGCUGU--GGACCGCg-CAc -5'
23158 3' -60.8 NC_005178.1 + 10373 0.69 0.206166
Target:  5'- cUGGUgGGCAGCGACAUCgaGGaGCa-- -3'
miRNA:   3'- -ACCAgCCGUCGCUGUGGa-CCgCGcac -5'
23158 3' -60.8 NC_005178.1 + 11927 0.7 0.175622
Target:  5'- cGGUUGGCAGCaacuaaaggccGCACuCUGGUugGCGUGa -3'
miRNA:   3'- aCCAGCCGUCGc----------UGUG-GACCG--CGCAC- -5'
23158 3' -60.8 NC_005178.1 + 12097 0.67 0.295461
Target:  5'- gUGGUCGcGUGGCGG-GCCUGGC-CGaUGg -3'
miRNA:   3'- -ACCAGC-CGUCGCUgUGGACCGcGC-AC- -5'
23158 3' -60.8 NC_005178.1 + 12652 0.8 0.029187
Target:  5'- cGGcUCGGCGGcCGGCGCgCUGGCGgGUGg -3'
miRNA:   3'- aCC-AGCCGUC-GCUGUG-GACCGCgCAC- -5'
23158 3' -60.8 NC_005178.1 + 13163 0.67 0.260509
Target:  5'- cGGUCGGCuGCGGCgcggugaacauGCCcaccugcuuggUGGCgGCGUa -3'
miRNA:   3'- aCCAGCCGuCGCUG-----------UGG-----------ACCG-CGCAc -5'
23158 3' -60.8 NC_005178.1 + 14376 0.66 0.31813
Target:  5'- cGGcUCGGCAGUGcuCACCaGGUGCc-- -3'
miRNA:   3'- aCC-AGCCGUCGCu-GUGGaCCGCGcac -5'
23158 3' -60.8 NC_005178.1 + 14845 0.66 0.325972
Target:  5'- aUGGcacUCGGCAGCGAC-CC-GGCGa--- -3'
miRNA:   3'- -ACC---AGCCGUCGCUGuGGaCCGCgcac -5'
23158 3' -60.8 NC_005178.1 + 16375 0.66 0.302875
Target:  5'- cGGgCGGCGGCGccuACGcCCUGGgGCa-- -3'
miRNA:   3'- aCCaGCCGUCGC---UGU-GGACCgCGcac -5'
23158 3' -60.8 NC_005178.1 + 16826 0.66 0.333151
Target:  5'- gGGUCagGGCGGCGAUgggcuugGCCUGGCcCa-- -3'
miRNA:   3'- aCCAG--CCGUCGCUG-------UGGACCGcGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.