miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 5' -56.1 NC_005178.1 + 5719 0.66 0.573203
Target:  5'- gUCCAGCGacccCGGAGCagauCGCCGCauCGGUggCg -3'
miRNA:   3'- -AGGUCGC----GCCUUG----GCGGUG--GCUAaaG- -5'
23158 5' -56.1 NC_005178.1 + 29698 0.66 0.573203
Target:  5'- aCgGGgGaCGGAugCGCCACUGGa--- -3'
miRNA:   3'- aGgUCgC-GCCUugGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 5494 0.66 0.529181
Target:  5'- aUCCAGCGCGG--UCGCCAguugCGAg--- -3'
miRNA:   3'- -AGGUCGCGCCuuGGCGGUg---GCUaaag -5'
23158 5' -56.1 NC_005178.1 + 27291 0.66 0.551058
Target:  5'- aCCAGCGUGG--CCGgCagGCCGAUgcgUCc -3'
miRNA:   3'- aGGUCGCGCCuuGGCgG--UGGCUAa--AG- -5'
23158 5' -56.1 NC_005178.1 + 16596 0.66 0.529181
Target:  5'- gCCGGCGaagaccuGGAcguugGCCGCUACCGGc--- -3'
miRNA:   3'- aGGUCGCg------CCU-----UGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 16539 0.66 0.562102
Target:  5'- gCCGGUgGCGGuGCUGCCGCCc----- -3'
miRNA:   3'- aGGUCG-CGCCuUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 22142 0.66 0.560995
Target:  5'- gUUCGGCGCcGAagcccgcGCUGCUGCCGGUUa- -3'
miRNA:   3'- -AGGUCGCGcCU-------UGGCGGUGGCUAAag -5'
23158 5' -56.1 NC_005178.1 + 3772 0.66 0.551058
Target:  5'- gCCaAGgGCGGcACCauGCCGCUGAUgUCu -3'
miRNA:   3'- aGG-UCgCGCCuUGG--CGGUGGCUAaAG- -5'
23158 5' -56.1 NC_005178.1 + 22540 0.66 0.540083
Target:  5'- cCCAGCagaGGGACCGCCcCUGGc--- -3'
miRNA:   3'- aGGUCGcg-CCUUGGCGGuGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 28760 0.66 0.566536
Target:  5'- cCUGGUGCGGcucagcgguugcaaaGACCGCCGCCc----- -3'
miRNA:   3'- aGGUCGCGCC---------------UUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 21176 0.66 0.551058
Target:  5'- cCCAGgGCguaGGcGCCGCCGCCcGAc--- -3'
miRNA:   3'- aGGUCgCG---CCuUGGCGGUGG-CUaaag -5'
23158 5' -56.1 NC_005178.1 + 26178 0.67 0.496997
Target:  5'- aUCGGCGCGGcgguGGCCGCUGCgGGc--- -3'
miRNA:   3'- aGGUCGCGCC----UUGGCGGUGgCUaaag -5'
23158 5' -56.1 NC_005178.1 + 11360 0.67 0.507632
Target:  5'- gCCAGCgccacgcccgcaGCGGccACCGCCgcGCCGAUg-- -3'
miRNA:   3'- aGGUCG------------CGCCu-UGGCGG--UGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 11549 0.67 0.494882
Target:  5'- cCCAGCGCcuGAAacgucgcgccgaCGCCACCGAa--- -3'
miRNA:   3'- aGGUCGCGc-CUUg-----------GCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 2980 0.67 0.486464
Target:  5'- cCCgAGCGCGG-AUgGCUGCCGAg--- -3'
miRNA:   3'- aGG-UCGCGCCuUGgCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 9536 0.67 0.486464
Target:  5'- cCUGGCGCGGGAaCGCCAaCGAg--- -3'
miRNA:   3'- aGGUCGCGCCUUgGCGGUgGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 17257 0.67 0.476038
Target:  5'- uUCCAGCGC--AACCuGCgGCCGAUc-- -3'
miRNA:   3'- -AGGUCGCGccUUGG-CGgUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 32203 0.67 0.476038
Target:  5'- cUCgGGCuCGGGGCCGC-ACCGGUg-- -3'
miRNA:   3'- -AGgUCGcGCCUUGGCGgUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 15410 0.67 0.486464
Target:  5'- -gCAGCGCGGGcuUCGgCGCCGAacUUCa -3'
miRNA:   3'- agGUCGCGCCUu-GGCgGUGGCUa-AAG- -5'
23158 5' -56.1 NC_005178.1 + 7313 0.68 0.415034
Target:  5'- cUCCAGCGCaugGGGGuCCGCCuucaucgccuggaGCCGAc--- -3'
miRNA:   3'- -AGGUCGCG---CCUU-GGCGG-------------UGGCUaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.