Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23158 | 5' | -56.1 | NC_005178.1 | + | 1973 | 0.7 | 0.335206 |
Target: 5'- uUCCgacguGGCGCgGGAACCGCUGCagcaGAggUCg -3' miRNA: 3'- -AGG-----UCGCG-CCUUGGCGGUGg---CUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 2150 | 0.68 | 0.455526 |
Target: 5'- gCCAGCGcCGGGGCCaguugGCCcucGCUGGUgUUCg -3' miRNA: 3'- aGGUCGC-GCCUUGG-----CGG---UGGCUA-AAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 2980 | 0.67 | 0.486464 |
Target: 5'- cCCgAGCGCGG-AUgGCUGCCGAg--- -3' miRNA: 3'- aGG-UCGCGCCuUGgCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 3772 | 0.66 | 0.551058 |
Target: 5'- gCCaAGgGCGGcACCauGCCGCUGAUgUCu -3' miRNA: 3'- aGG-UCgCGCCuUGG--CGGUGGCUAaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 5323 | 0.72 | 0.233502 |
Target: 5'- cUCCAGCGCcugaaccuGGAGCUGUaCACCGGUg-- -3' miRNA: 3'- -AGGUCGCG--------CCUUGGCG-GUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 5494 | 0.66 | 0.529181 |
Target: 5'- aUCCAGCGCGG--UCGCCAguugCGAg--- -3' miRNA: 3'- -AGGUCGCGCCuuGGCGGUg---GCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 5719 | 0.66 | 0.573203 |
Target: 5'- gUCCAGCGacccCGGAGCagauCGCCGCauCGGUggCg -3' miRNA: 3'- -AGGUCGC----GCCUUG----GCGGUG--GCUAaaG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 5892 | 0.74 | 0.177802 |
Target: 5'- gUCCAGCGCGaGACgCGCCGCCa----- -3' miRNA: 3'- -AGGUCGCGCcUUG-GCGGUGGcuaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 6326 | 0.72 | 0.266498 |
Target: 5'- gUCAGuCGUGGGACCGCCugCGc---- -3' miRNA: 3'- aGGUC-GCGCCUUGGCGGugGCuaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 7313 | 0.68 | 0.415034 |
Target: 5'- cUCCAGCGCaugGGGGuCCGCCuucaucgccuggaGCCGAc--- -3' miRNA: 3'- -AGGUCGCG---CCUU-GGCGG-------------UGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 8832 | 0.7 | 0.32697 |
Target: 5'- cCCGGCGCGugccggguguGAGCCccgacGCCACCGAc--- -3' miRNA: 3'- aGGUCGCGC----------CUUGG-----CGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 9536 | 0.67 | 0.486464 |
Target: 5'- cCUGGCGCGGGAaCGCCAaCGAg--- -3' miRNA: 3'- aGGUCGCGCCUUgGCGGUgGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 10943 | 0.73 | 0.202347 |
Target: 5'- aUCCGGCGCGGcccGCCuccuGCCccccgcgucaccacACCGAUUUCc -3' miRNA: 3'- -AGGUCGCGCCu--UGG----CGG--------------UGGCUAAAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11141 | 0.74 | 0.182288 |
Target: 5'- aUCAGCGCGGGcgcccugGCCGCCGCCc----- -3' miRNA: 3'- aGGUCGCGCCU-------UGGCGGUGGcuaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11360 | 0.67 | 0.507632 |
Target: 5'- gCCAGCgccacgcccgcaGCGGccACCGCCgcGCCGAUg-- -3' miRNA: 3'- aGGUCG------------CGCCu-UGGCGG--UGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11549 | 0.67 | 0.494882 |
Target: 5'- cCCAGCGCcuGAAacgucgcgccgaCGCCACCGAa--- -3' miRNA: 3'- aGGUCGCGc-CUUg-----------GCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11988 | 0.7 | 0.310949 |
Target: 5'- cCUGGUGCGGGcugguaccggGCUGCUGCCGAggUCu -3' miRNA: 3'- aGGUCGCGCCU----------UGGCGGUGGCUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13005 | 0.7 | 0.352131 |
Target: 5'- gUCCAGCa-GGAuuCCGCCGCUGAUc-- -3' miRNA: 3'- -AGGUCGcgCCUu-GGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13035 | 0.73 | 0.22733 |
Target: 5'- aCCGGCGaCGGuguuGCCGUCGCUGAUc-- -3' miRNA: 3'- aGGUCGC-GCCu---UGGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13814 | 0.7 | 0.310949 |
Target: 5'- cCCAGCuuGCGGGggaguuccGCCGCCagaucgagGCCGAggUCg -3' miRNA: 3'- aGGUCG--CGCCU--------UGGCGG--------UGGCUaaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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