miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 5' -56.1 NC_005178.1 + 14303 0.69 0.387762
Target:  5'- cUCCGGCaaGCGGAugCGCgGCC---UUCg -3'
miRNA:   3'- -AGGUCG--CGCCUugGCGgUGGcuaAAG- -5'
23158 5' -56.1 NC_005178.1 + 14325 0.69 0.387762
Target:  5'- cUCGGCGCGGAugCGCUcgACCa----- -3'
miRNA:   3'- aGGUCGCGCCUugGCGG--UGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 15059 0.7 0.352131
Target:  5'- gUCCGaCGCGGAcggcucACCcucGCCGCCGAcgUCg -3'
miRNA:   3'- -AGGUcGCGCCU------UGG---CGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 15410 0.67 0.486464
Target:  5'- -gCAGCGCGGGcuUCGgCGCCGAacUUCa -3'
miRNA:   3'- agGUCGCGCCUu-GGCgGUGGCUa-AAG- -5'
23158 5' -56.1 NC_005178.1 + 16539 0.66 0.562102
Target:  5'- gCCGGUgGCGGuGCUGCCGCCc----- -3'
miRNA:   3'- aGGUCG-CGCCuUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 16596 0.66 0.529181
Target:  5'- gCCGGCGaagaccuGGAcguugGCCGCUACCGGc--- -3'
miRNA:   3'- aGGUCGCg------CCU-----UGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 17257 0.67 0.476038
Target:  5'- uUCCAGCGC--AACCuGCgGCCGAUc-- -3'
miRNA:   3'- -AGGUCGCGccUUGG-CGgUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 20207 0.69 0.360818
Target:  5'- gCCGGCGCGG-GCUGCCgaGCUGGg--- -3'
miRNA:   3'- aGGUCGCGCCuUGGCGG--UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 20451 0.69 0.386842
Target:  5'- cCCAGgaCGCGGAcgucgagcagaucGCCGCCGCCa----- -3'
miRNA:   3'- aGGUC--GCGCCU-------------UGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 21010 0.69 0.378635
Target:  5'- gCCGuGgGCGGcagcACCGCCACCGGc--- -3'
miRNA:   3'- aGGU-CgCGCCu---UGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 21176 0.66 0.551058
Target:  5'- cCCAGgGCguaGGcGCCGCCGCCcGAc--- -3'
miRNA:   3'- aGGUCgCG---CCuUGGCGGUGG-CUaaag -5'
23158 5' -56.1 NC_005178.1 + 22142 0.66 0.560995
Target:  5'- gUUCGGCGCcGAagcccgcGCUGCUGCCGGUUa- -3'
miRNA:   3'- -AGGUCGCGcCU-------UGGCGGUGGCUAAag -5'
23158 5' -56.1 NC_005178.1 + 22540 0.66 0.540083
Target:  5'- cCCAGCagaGGGACCGCCcCUGGc--- -3'
miRNA:   3'- aGGUCGcg-CCUUGGCGGuGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 22922 0.68 0.406444
Target:  5'- cUCCAGCGCGGcGACCccuucGUCGuCCGAg--- -3'
miRNA:   3'- -AGGUCGCGCC-UUGG-----CGGU-GGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 24514 0.71 0.303166
Target:  5'- aUCAGCGaCGGcaacACCGUCGCCGGUa-- -3'
miRNA:   3'- aGGUCGC-GCCu---UGGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 24901 0.7 0.32697
Target:  5'- gCCAGCGCGc--CgGCCGCCGAg--- -3'
miRNA:   3'- aGGUCGCGCcuuGgCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 25077 0.68 0.445451
Target:  5'- aCCAGCGCGaccagcucGGCCGCuaCACCGAg--- -3'
miRNA:   3'- aGGUCGCGCc-------UUGGCG--GUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 25123 0.69 0.386842
Target:  5'- -gCGGCGgcauCGGGguugucaucagucACCGCCACCGGggUCg -3'
miRNA:   3'- agGUCGC----GCCU-------------UGGCGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 26178 0.67 0.496997
Target:  5'- aUCGGCGCGGcgguGGCCGCUGCgGGc--- -3'
miRNA:   3'- aGGUCGCGCC----UUGGCGGUGgCUaaag -5'
23158 5' -56.1 NC_005178.1 + 26455 0.73 0.198513
Target:  5'- -gCAGCGCGGcGCUGCCgGCCGAg--- -3'
miRNA:   3'- agGUCGCGCCuUGGCGG-UGGCUaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.