Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23158 | 5' | -56.1 | NC_005178.1 | + | 5892 | 0.74 | 0.177802 |
Target: 5'- gUCCAGCGCGaGACgCGCCGCCa----- -3' miRNA: 3'- -AGGUCGCGCcUUG-GCGGUGGcuaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 27234 | 0.74 | 0.180282 |
Target: 5'- gUCCAGCGUcaccgaggcgaaGAACCGCCuggaccaguugcaaACCGAUUUCa -3' miRNA: 3'- -AGGUCGCGc-----------CUUGGCGG--------------UGGCUAAAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11141 | 0.74 | 0.182288 |
Target: 5'- aUCAGCGCGGGcgcccugGCCGCCGCCc----- -3' miRNA: 3'- aGGUCGCGCCU-------UGGCGGUGGcuaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 10943 | 0.73 | 0.202347 |
Target: 5'- aUCCGGCGCGGcccGCCuccuGCCccccgcgucaccacACCGAUUUCc -3' miRNA: 3'- -AGGUCGCGCCu--UGG----CGG--------------UGGCUAAAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 5323 | 0.72 | 0.233502 |
Target: 5'- cUCCAGCGCcugaaccuGGAGCUGUaCACCGGUg-- -3' miRNA: 3'- -AGGUCGCG--------CCUUGGCG-GUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 6326 | 0.72 | 0.266498 |
Target: 5'- gUCAGuCGUGGGACCGCCugCGc---- -3' miRNA: 3'- aGGUC-GCGCCUUGGCGGugGCuaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 21010 | 0.69 | 0.378635 |
Target: 5'- gCCGuGgGCGGcagcACCGCCACCGGc--- -3' miRNA: 3'- aGGU-CgCGCCu---UGGCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 1973 | 0.7 | 0.335206 |
Target: 5'- uUCCgacguGGCGCgGGAACCGCUGCagcaGAggUCg -3' miRNA: 3'- -AGG-----UCGCG-CCUUGGCGGUGg---CUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 8832 | 0.7 | 0.32697 |
Target: 5'- cCCGGCGCGugccggguguGAGCCccgacGCCACCGAc--- -3' miRNA: 3'- aGGUCGCGC----------CUUGG-----CGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13814 | 0.7 | 0.310949 |
Target: 5'- cCCAGCuuGCGGGggaguuccGCCGCCagaucgagGCCGAggUCg -3' miRNA: 3'- aGGUCG--CGCCU--------UGGCGG--------UGGCUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11988 | 0.7 | 0.310949 |
Target: 5'- cCUGGUGCGGGcugguaccggGCUGCUGCCGAggUCu -3' miRNA: 3'- aGGUCGCGCCU----------UGGCGGUGGCUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 24514 | 0.71 | 0.303166 |
Target: 5'- aUCAGCGaCGGcaacACCGUCGCCGGUa-- -3' miRNA: 3'- aGGUCGC-GCCu---UGGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 20207 | 0.69 | 0.360818 |
Target: 5'- gCCGGCGCGG-GCUGCCgaGCUGGg--- -3' miRNA: 3'- aGGUCGCGCCuUGGCGG--UGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 15059 | 0.7 | 0.352131 |
Target: 5'- gUCCGaCGCGGAcggcucACCcucGCCGCCGAcgUCg -3' miRNA: 3'- -AGGUcGCGCCU------UGG---CGGUGGCUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13005 | 0.7 | 0.352131 |
Target: 5'- gUCCAGCa-GGAuuCCGCCGCUGAUc-- -3' miRNA: 3'- -AGGUCGcgCCUu-GGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 24901 | 0.7 | 0.32697 |
Target: 5'- gCCAGCGCGc--CgGCCGCCGAg--- -3' miRNA: 3'- aGGUCGCGCcuuGgCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 28546 | 0.71 | 0.303166 |
Target: 5'- -aCGGCGCGGAGuCgGCUAUCGAcgUCu -3' miRNA: 3'- agGUCGCGCCUU-GgCGGUGGCUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 26901 | 0.71 | 0.273534 |
Target: 5'- gUCGGCGCGGAGaCGCCgGCCGGg--- -3' miRNA: 3'- aGGUCGCGCCUUgGCGG-UGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13035 | 0.73 | 0.22733 |
Target: 5'- aCCGGCGaCGGuguuGCCGUCGCUGAUc-- -3' miRNA: 3'- aGGUCGC-GCCu---UGGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 29698 | 0.66 | 0.573203 |
Target: 5'- aCgGGgGaCGGAugCGCCACUGGa--- -3' miRNA: 3'- aGgUCgC-GCCUugGCGGUGGCUaaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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