miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 5' -56.1 NC_005178.1 + 7313 0.68 0.415034
Target:  5'- cUCCAGCGCaugGGGGuCCGCCuucaucgccuggaGCCGAc--- -3'
miRNA:   3'- -AGGUCGCG---CCUU-GGCGG-------------UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 8832 0.7 0.32697
Target:  5'- cCCGGCGCGugccggguguGAGCCccgacGCCACCGAc--- -3'
miRNA:   3'- aGGUCGCGC----------CUUGG-----CGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 1973 0.7 0.335206
Target:  5'- uUCCgacguGGCGCgGGAACCGCUGCagcaGAggUCg -3'
miRNA:   3'- -AGG-----UCGCG-CCUUGGCGGUGg---CUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 21010 0.69 0.378635
Target:  5'- gCCGuGgGCGGcagcACCGCCACCGGc--- -3'
miRNA:   3'- aGGU-CgCGCCu---UGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 20451 0.69 0.386842
Target:  5'- cCCAGgaCGCGGAcgucgagcagaucGCCGCCGCCa----- -3'
miRNA:   3'- aGGUC--GCGCCU-------------UGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 14303 0.69 0.387762
Target:  5'- cUCCGGCaaGCGGAugCGCgGCC---UUCg -3'
miRNA:   3'- -AGGUCG--CGCCUugGCGgUGGcuaAAG- -5'
23158 5' -56.1 NC_005178.1 + 31444 0.69 0.387762
Target:  5'- aUCCAGCuGCuccaGGAACCGCUggcgGCCGGc--- -3'
miRNA:   3'- -AGGUCG-CG----CCUUGGCGG----UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 31058 0.69 0.397032
Target:  5'- gCCAG-GCGucGCCGCCGCUGggUUUu -3'
miRNA:   3'- aGGUCgCGCcuUGGCGGUGGCuaAAG- -5'
23158 5' -56.1 NC_005178.1 + 31304 0.68 0.405496
Target:  5'- cCCAGCGcCGGGcuaugcgccuggcGCCGC-GCCGGgagUUCg -3'
miRNA:   3'- aGGUCGC-GCCU-------------UGGCGgUGGCUa--AAG- -5'
23158 5' -56.1 NC_005178.1 + 13814 0.7 0.310949
Target:  5'- cCCAGCuuGCGGGggaguuccGCCGCCagaucgagGCCGAggUCg -3'
miRNA:   3'- aGGUCG--CGCCU--------UGGCGG--------UGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 11988 0.7 0.310949
Target:  5'- cCUGGUGCGGGcugguaccggGCUGCUGCCGAggUCu -3'
miRNA:   3'- aGGUCGCGCCU----------UGGCGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 24514 0.71 0.303166
Target:  5'- aUCAGCGaCGGcaacACCGUCGCCGGUa-- -3'
miRNA:   3'- aGGUCGC-GCCu---UGGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 34831 0.79 0.077389
Target:  5'- aCCGGCGUGGcGCCGCCACCa----- -3'
miRNA:   3'- aGGUCGCGCCuUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 35414 0.77 0.123202
Target:  5'- cCCGGCGCuG-GCCGCCACCGAc--- -3'
miRNA:   3'- aGGUCGCGcCuUGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 5892 0.74 0.177802
Target:  5'- gUCCAGCGCGaGACgCGCCGCCa----- -3'
miRNA:   3'- -AGGUCGCGCcUUG-GCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 27234 0.74 0.180282
Target:  5'- gUCCAGCGUcaccgaggcgaaGAACCGCCuggaccaguugcaaACCGAUUUCa -3'
miRNA:   3'- -AGGUCGCGc-----------CUUGGCGG--------------UGGCUAAAG- -5'
23158 5' -56.1 NC_005178.1 + 11141 0.74 0.182288
Target:  5'- aUCAGCGCGGGcgcccugGCCGCCGCCc----- -3'
miRNA:   3'- aGGUCGCGCCU-------UGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 10943 0.73 0.202347
Target:  5'- aUCCGGCGCGGcccGCCuccuGCCccccgcgucaccacACCGAUUUCc -3'
miRNA:   3'- -AGGUCGCGCCu--UGG----CGG--------------UGGCUAAAG- -5'
23158 5' -56.1 NC_005178.1 + 5323 0.72 0.233502
Target:  5'- cUCCAGCGCcugaaccuGGAGCUGUaCACCGGUg-- -3'
miRNA:   3'- -AGGUCGCG--------CCUUGGCG-GUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 6326 0.72 0.266498
Target:  5'- gUCAGuCGUGGGACCGCCugCGc---- -3'
miRNA:   3'- aGGUC-GCGCCUUGGCGGugGCuaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.