Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23158 | 5' | -56.1 | NC_005178.1 | + | 26455 | 0.73 | 0.198513 |
Target: 5'- -gCAGCGCGGcGCUGCCgGCCGAg--- -3' miRNA: 3'- agGUCGCGCCuUGGCGG-UGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11360 | 0.67 | 0.507632 |
Target: 5'- gCCAGCgccacgcccgcaGCGGccACCGCCgcGCCGAUg-- -3' miRNA: 3'- aGGUCG------------CGCCu-UGGCGG--UGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 5494 | 0.66 | 0.529181 |
Target: 5'- aUCCAGCGCGG--UCGCCAguugCGAg--- -3' miRNA: 3'- -AGGUCGCGCCuuGGCGGUg---GCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 29698 | 0.66 | 0.573203 |
Target: 5'- aCgGGgGaCGGAugCGCCACUGGa--- -3' miRNA: 3'- aGgUCgC-GCCUugGCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 24901 | 0.7 | 0.32697 |
Target: 5'- gCCAGCGCGc--CgGCCGCCGAg--- -3' miRNA: 3'- aGGUCGCGCcuuGgCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13005 | 0.7 | 0.352131 |
Target: 5'- gUCCAGCa-GGAuuCCGCCGCUGAUc-- -3' miRNA: 3'- -AGGUCGcgCCUu-GGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 20207 | 0.69 | 0.360818 |
Target: 5'- gCCGGCGCGG-GCUGCCgaGCUGGg--- -3' miRNA: 3'- aGGUCGCGCCuUGGCGG--UGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 31806 | 0.69 | 0.360818 |
Target: 5'- gUCguGCcCGaGGCCGCCACCGAUg-- -3' miRNA: 3'- -AGguCGcGCcUUGGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 29285 | 0.68 | 0.406444 |
Target: 5'- cUCCAGUGCGuccCCGCCcUCGGUUUg -3' miRNA: 3'- -AGGUCGCGCcuuGGCGGuGGCUAAAg -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 11549 | 0.67 | 0.494882 |
Target: 5'- cCCAGCGCcuGAAacgucgcgccgaCGCCACCGAa--- -3' miRNA: 3'- aGGUCGCGc-CUUg-----------GCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 2150 | 0.68 | 0.455526 |
Target: 5'- gCCAGCGcCGGGGCCaguugGCCcucGCUGGUgUUCg -3' miRNA: 3'- aGGUCGC-GCCUUGG-----CGG---UGGCUA-AAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 14325 | 0.69 | 0.387762 |
Target: 5'- cUCGGCGCGGAugCGCUcgACCa----- -3' miRNA: 3'- aGGUCGCGCCUugGCGG--UGGcuaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 13035 | 0.73 | 0.22733 |
Target: 5'- aCCGGCGaCGGuguuGCCGUCGCUGAUc-- -3' miRNA: 3'- aGGUCGC-GCCu---UGGCGGUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 32203 | 0.67 | 0.476038 |
Target: 5'- cUCgGGCuCGGGGCCGC-ACCGGUg-- -3' miRNA: 3'- -AGgUCGcGCCUUGGCGgUGGCUAaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 26901 | 0.71 | 0.273534 |
Target: 5'- gUCGGCGCGGAGaCGCCgGCCGGg--- -3' miRNA: 3'- aGGUCGCGCCUUgGCGG-UGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 25123 | 0.69 | 0.386842 |
Target: 5'- -gCGGCGgcauCGGGguugucaucagucACCGCCACCGGggUCg -3' miRNA: 3'- agGUCGC----GCCU-------------UGGCGGUGGCUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 15410 | 0.67 | 0.486464 |
Target: 5'- -gCAGCGCGGGcuUCGgCGCCGAacUUCa -3' miRNA: 3'- agGUCGCGCCUu-GGCgGUGGCUa-AAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 16596 | 0.66 | 0.529181 |
Target: 5'- gCCGGCGaagaccuGGAcguugGCCGCUACCGGc--- -3' miRNA: 3'- aGGUCGCg------CCU-----UGGCGGUGGCUaaag -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 28546 | 0.71 | 0.303166 |
Target: 5'- -aCGGCGCGGAGuCgGCUAUCGAcgUCu -3' miRNA: 3'- agGUCGCGCCUU-GgCGGUGGCUaaAG- -5' |
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23158 | 5' | -56.1 | NC_005178.1 | + | 15059 | 0.7 | 0.352131 |
Target: 5'- gUCCGaCGCGGAcggcucACCcucGCCGCCGAcgUCg -3' miRNA: 3'- -AGGUcGCGCCU------UGG---CGGUGGCUaaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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