miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 5' -56.1 NC_005178.1 + 35414 0.77 0.123202
Target:  5'- cCCGGCGCuG-GCCGCCACCGAc--- -3'
miRNA:   3'- aGGUCGCGcCuUGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 35076 0.68 0.454513
Target:  5'- aCCGGCGacuggugcccgacCGGAcuACuCGCCGCCGAg--- -3'
miRNA:   3'- aGGUCGC-------------GCCU--UG-GCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 34831 0.79 0.077389
Target:  5'- aCCGGCGUGGcGCCGCCACCa----- -3'
miRNA:   3'- aGGUCGCGCCuUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 32203 0.67 0.476038
Target:  5'- cUCgGGCuCGGGGCCGC-ACCGGUg-- -3'
miRNA:   3'- -AGgUCGcGCCUUGGCGgUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 31806 0.69 0.360818
Target:  5'- gUCguGCcCGaGGCCGCCACCGAUg-- -3'
miRNA:   3'- -AGguCGcGCcUUGGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 31444 0.69 0.387762
Target:  5'- aUCCAGCuGCuccaGGAACCGCUggcgGCCGGc--- -3'
miRNA:   3'- -AGGUCG-CG----CCUUGGCGG----UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 31304 0.68 0.405496
Target:  5'- cCCAGCGcCGGGcuaugcgccuggcGCCGC-GCCGGgagUUCg -3'
miRNA:   3'- aGGUCGC-GCCU-------------UGGCGgUGGCUa--AAG- -5'
23158 5' -56.1 NC_005178.1 + 31058 0.69 0.397032
Target:  5'- gCCAG-GCGucGCCGCCGCUGggUUUu -3'
miRNA:   3'- aGGUCgCGCcuUGGCGGUGGCuaAAG- -5'
23158 5' -56.1 NC_005178.1 + 30618 1.1 0.000391
Target:  5'- cUCCAGCGCGGAACCGCCACCGAUUUCg -3'
miRNA:   3'- -AGGUCGCGCCUUGGCGGUGGCUAAAG- -5'
23158 5' -56.1 NC_005178.1 + 29698 0.66 0.573203
Target:  5'- aCgGGgGaCGGAugCGCCACUGGa--- -3'
miRNA:   3'- aGgUCgC-GCCUugGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 29285 0.68 0.406444
Target:  5'- cUCCAGUGCGuccCCGCCcUCGGUUUg -3'
miRNA:   3'- -AGGUCGCGCcuuGGCGGuGGCUAAAg -5'
23158 5' -56.1 NC_005178.1 + 28760 0.66 0.566536
Target:  5'- cCUGGUGCGGcucagcgguugcaaaGACCGCCGCCc----- -3'
miRNA:   3'- aGGUCGCGCC---------------UUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 28546 0.71 0.303166
Target:  5'- -aCGGCGCGGAGuCgGCUAUCGAcgUCu -3'
miRNA:   3'- agGUCGCGCCUU-GgCGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 28293 0.68 0.425682
Target:  5'- aCCGGCGCugcgGGAGCUGCCgggGCCGc---- -3'
miRNA:   3'- aGGUCGCG----CCUUGGCGG---UGGCuaaag -5'
23158 5' -56.1 NC_005178.1 + 27291 0.66 0.551058
Target:  5'- aCCAGCGUGG--CCGgCagGCCGAUgcgUCc -3'
miRNA:   3'- aGGUCGCGCCuuGGCgG--UGGCUAa--AG- -5'
23158 5' -56.1 NC_005178.1 + 27234 0.74 0.180282
Target:  5'- gUCCAGCGUcaccgaggcgaaGAACCGCCuggaccaguugcaaACCGAUUUCa -3'
miRNA:   3'- -AGGUCGCGc-----------CUUGGCGG--------------UGGCUAAAG- -5'
23158 5' -56.1 NC_005178.1 + 26901 0.71 0.273534
Target:  5'- gUCGGCGCGGAGaCGCCgGCCGGg--- -3'
miRNA:   3'- aGGUCGCGCCUUgGCGG-UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 26455 0.73 0.198513
Target:  5'- -gCAGCGCGGcGCUGCCgGCCGAg--- -3'
miRNA:   3'- agGUCGCGCCuUGGCGG-UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 26178 0.67 0.496997
Target:  5'- aUCGGCGCGGcgguGGCCGCUGCgGGc--- -3'
miRNA:   3'- aGGUCGCGCC----UUGGCGGUGgCUaaag -5'
23158 5' -56.1 NC_005178.1 + 25123 0.69 0.386842
Target:  5'- -gCGGCGgcauCGGGguugucaucagucACCGCCACCGGggUCg -3'
miRNA:   3'- agGUCGC----GCCU-------------UGGCGGUGGCUaaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.