miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 5' -56.1 NC_005178.1 + 35076 0.68 0.454513
Target:  5'- aCCGGCGacuggugcccgacCGGAcuACuCGCCGCCGAg--- -3'
miRNA:   3'- aGGUCGC-------------GCCU--UG-GCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 25077 0.68 0.445451
Target:  5'- aCCAGCGCGaccagcucGGCCGCuaCACCGAg--- -3'
miRNA:   3'- aGGUCGCGCc-------UUGGCG--GUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 28293 0.68 0.425682
Target:  5'- aCCGGCGCugcgGGAGCUGCCgggGCCGc---- -3'
miRNA:   3'- aGGUCGCG----CCUUGGCGG---UGGCuaaag -5'
23158 5' -56.1 NC_005178.1 + 7313 0.68 0.415034
Target:  5'- cUCCAGCGCaugGGGGuCCGCCuucaucgccuggaGCCGAc--- -3'
miRNA:   3'- -AGGUCGCG---CCUU-GGCGG-------------UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 29285 0.68 0.406444
Target:  5'- cUCCAGUGCGuccCCGCCcUCGGUUUg -3'
miRNA:   3'- -AGGUCGCGCcuuGGCGGuGGCUAAAg -5'
23158 5' -56.1 NC_005178.1 + 22922 0.68 0.406444
Target:  5'- cUCCAGCGCGGcGACCccuucGUCGuCCGAg--- -3'
miRNA:   3'- -AGGUCGCGCC-UUGG-----CGGU-GGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 31304 0.68 0.405496
Target:  5'- cCCAGCGcCGGGcuaugcgccuggcGCCGC-GCCGGgagUUCg -3'
miRNA:   3'- aGGUCGC-GCCU-------------UGGCGgUGGCUa--AAG- -5'
23158 5' -56.1 NC_005178.1 + 31058 0.69 0.397032
Target:  5'- gCCAG-GCGucGCCGCCGCUGggUUUu -3'
miRNA:   3'- aGGUCgCGCcuUGGCGGUGGCuaAAG- -5'
23158 5' -56.1 NC_005178.1 + 31444 0.69 0.387762
Target:  5'- aUCCAGCuGCuccaGGAACCGCUggcgGCCGGc--- -3'
miRNA:   3'- -AGGUCG-CG----CCUUGGCGG----UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 14325 0.69 0.387762
Target:  5'- cUCGGCGCGGAugCGCUcgACCa----- -3'
miRNA:   3'- aGGUCGCGCCUugGCGG--UGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 14303 0.69 0.387762
Target:  5'- cUCCGGCaaGCGGAugCGCgGCC---UUCg -3'
miRNA:   3'- -AGGUCG--CGCCUugGCGgUGGcuaAAG- -5'
23158 5' -56.1 NC_005178.1 + 20451 0.69 0.386842
Target:  5'- cCCAGgaCGCGGAcgucgagcagaucGCCGCCGCCa----- -3'
miRNA:   3'- aGGUC--GCGCCU-------------UGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 25123 0.69 0.386842
Target:  5'- -gCGGCGgcauCGGGguugucaucagucACCGCCACCGGggUCg -3'
miRNA:   3'- agGUCGC----GCCU-------------UGGCGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 21010 0.69 0.378635
Target:  5'- gCCGuGgGCGGcagcACCGCCACCGGc--- -3'
miRNA:   3'- aGGU-CgCGCCu---UGGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 20207 0.69 0.360818
Target:  5'- gCCGGCGCGG-GCUGCCgaGCUGGg--- -3'
miRNA:   3'- aGGUCGCGCCuUGGCGG--UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 31806 0.69 0.360818
Target:  5'- gUCguGCcCGaGGCCGCCACCGAUg-- -3'
miRNA:   3'- -AGguCGcGCcUUGGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 13005 0.7 0.352131
Target:  5'- gUCCAGCa-GGAuuCCGCCGCUGAUc-- -3'
miRNA:   3'- -AGGUCGcgCCUu-GGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 15059 0.7 0.352131
Target:  5'- gUCCGaCGCGGAcggcucACCcucGCCGCCGAcgUCg -3'
miRNA:   3'- -AGGUcGCGCCU------UGG---CGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 1973 0.7 0.335206
Target:  5'- uUCCgacguGGCGCgGGAACCGCUGCagcaGAggUCg -3'
miRNA:   3'- -AGG-----UCGCG-CCUUGGCGGUGg---CUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 8832 0.7 0.32697
Target:  5'- cCCGGCGCGugccggguguGAGCCccgacGCCACCGAc--- -3'
miRNA:   3'- aGGUCGCGC----------CUUGG-----CGGUGGCUaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.