Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23159 | 3' | -54 | NC_005178.1 | + | 18327 | 0.66 | 0.694694 |
Target: 5'- aGCU--GGAGCUGGuggACCGcGAgGUCCa -3' miRNA: 3'- gCGGaaCCUCGACU---UGGUcCUgUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 19653 | 0.66 | 0.694694 |
Target: 5'- aCGCCUgccaGGcgcGCUGGcguACCGGGuccaggagcACGUCCu -3' miRNA: 3'- -GCGGAa---CCu--CGACU---UGGUCC---------UGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 23444 | 0.66 | 0.672091 |
Target: 5'- aCGCCca-GGGCgacGGCCAGGGCGcCCg -3' miRNA: 3'- -GCGGaacCUCGac-UUGGUCCUGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 16931 | 0.66 | 0.672091 |
Target: 5'- gGCCcuccUGGAuagcGCUGuuGAUCAGGcCGUCCa -3' miRNA: 3'- gCGGa---ACCU----CGAC--UUGGUCCuGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 4057 | 0.66 | 0.669821 |
Target: 5'- uCGCCcgcGAGCUGGaggaauuccacggcgACCAGGuggccgugggcuacgACAUCCa -3' miRNA: 3'- -GCGGaacCUCGACU---------------UGGUCC---------------UGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 4932 | 0.66 | 0.660723 |
Target: 5'- uCGCCgaGGAaCUGGccGCCAGcGGCcgCCc -3' miRNA: 3'- -GCGGaaCCUcGACU--UGGUC-CUGuaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 12154 | 0.67 | 0.642479 |
Target: 5'- gCGCCUaccgcgacguccUGGAGCagucggcggcacaacUGAAgacgguCCAGGACA-CCa -3' miRNA: 3'- -GCGGA------------ACCUCG---------------ACUU------GGUCCUGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 35527 | 0.67 | 0.637912 |
Target: 5'- cCGCCUgaggGGAcGCUGGauuuuccuucaGCCAGGccGCGaCCu -3' miRNA: 3'- -GCGGAa---CCU-CGACU-----------UGGUCC--UGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 8488 | 0.67 | 0.637912 |
Target: 5'- aCGCCUcUGGAGCUGggUUcaAGuACA-CCg -3' miRNA: 3'- -GCGGA-ACCUCGACuuGG--UCcUGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 13220 | 0.67 | 0.637912 |
Target: 5'- cCGCUUUGaacGGCUGggUCGGGGCcggcGUCg -3' miRNA: 3'- -GCGGAACc--UCGACuuGGUCCUG----UAGg -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 17005 | 0.67 | 0.615079 |
Target: 5'- gGCCcUGGAGCUGggUgAcagcuucaacGGGCGcCCa -3' miRNA: 3'- gCGGaACCUCGACuuGgU----------CCUGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 33871 | 0.67 | 0.615079 |
Target: 5'- uGuCCUguucGGuGaagaGGACCAGGGCGUCCu -3' miRNA: 3'- gC-GGAa---CCuCga--CUUGGUCCUGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 14641 | 0.67 | 0.603681 |
Target: 5'- uCGCCgcgcUGGAGUUcuACCAGGAgCGcgCCg -3' miRNA: 3'- -GCGGa---ACCUCGAcuUGGUCCU-GUa-GG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 15146 | 0.67 | 0.596854 |
Target: 5'- gGCCUU-GAGCUGcGCCucagucagggcggacAGGGCGauUCCg -3' miRNA: 3'- gCGGAAcCUCGACuUGG---------------UCCUGU--AGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 21063 | 0.67 | 0.592309 |
Target: 5'- uGCC--GGAGCgguugaGGACCAGGAgGggCCa -3' miRNA: 3'- gCGGaaCCUCGa-----CUUGGUCCUgUa-GG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 14449 | 0.67 | 0.592309 |
Target: 5'- gCGCCggggugccGGAGCUGGucaggGCCAGGcugaGCuUCCc -3' miRNA: 3'- -GCGGaa------CCUCGACU-----UGGUCC----UGuAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 6476 | 0.67 | 0.592309 |
Target: 5'- uGCC--GGAGCUGGugagccaguucgGCCAGGucACcgCCg -3' miRNA: 3'- gCGGaaCCUCGACU------------UGGUCC--UGuaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 32566 | 0.67 | 0.580974 |
Target: 5'- uCGaCC-UGGccAGCggcGACCAGGugGUCCa -3' miRNA: 3'- -GC-GGaACC--UCGac-UUGGUCCugUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 26776 | 0.68 | 0.569684 |
Target: 5'- aCGCC-UGGAGCaacuGACCaaGGGGCAggccuUCCa -3' miRNA: 3'- -GCGGaACCUCGac--UUGG--UCCUGU-----AGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 15041 | 0.68 | 0.558448 |
Target: 5'- uGCCUggugUGGGGCguUGAGgcgguccaguuCCAGGAguUCCu -3' miRNA: 3'- gCGGA----ACCUCG--ACUU-----------GGUCCUguAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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