Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23159 | 5' | -63.7 | NC_005178.1 | + | 30799 | 1.1 | 0.000097 |
Target: 5'- aGCGGUCGCGGCCUCGACCUGGGCCGGc -3' miRNA: 3'- -CGCCAGCGCCGGAGCUGGACCCGGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 9959 | 0.77 | 0.043712 |
Target: 5'- aGCGcGUCGCuguaGGCCUUGauGCCUGGGCCu- -3' miRNA: 3'- -CGC-CAGCG----CCGGAGC--UGGACCCGGcc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 23703 | 0.74 | 0.066189 |
Target: 5'- cGgGGUCGaaaccugcgaccuCGGCCUCGAUCUGGcGgCGGa -3' miRNA: 3'- -CgCCAGC-------------GCCGGAGCUGGACC-CgGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 17084 | 0.74 | 0.066373 |
Target: 5'- gGCGGUgGCGGCggcgaucugCUCGAcguccgcguCCUGGGCCaGGc -3' miRNA: 3'- -CGCCAgCGCCG---------GAGCU---------GGACCCGG-CC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 30476 | 0.71 | 0.1116 |
Target: 5'- -aGGUCaCcGCCUCGcCCaGGGCCGGg -3' miRNA: 3'- cgCCAGcGcCGGAGCuGGaCCCGGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 20715 | 0.71 | 0.1116 |
Target: 5'- aGCGG-CGCgaccaggcuaucGGCCUgGuuuugcauguCCUGGGCCGGc -3' miRNA: 3'- -CGCCaGCG------------CCGGAgCu---------GGACCCGGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 31054 | 0.71 | 0.12098 |
Target: 5'- aCGGUgGCGGCggUGACCU-GGCCGa -3' miRNA: 3'- cGCCAgCGCCGgaGCUGGAcCCGGCc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 9022 | 0.7 | 0.127636 |
Target: 5'- cGCGccGUUGcCGGCUUCGACCUGGagcaauGCCGc -3' miRNA: 3'- -CGC--CAGC-GCCGGAGCUGGACC------CGGCc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 2141 | 0.7 | 0.138257 |
Target: 5'- uCGGUgGCGGCCagCG-CCgGGGCCa- -3' miRNA: 3'- cGCCAgCGCCGGa-GCuGGaCCCGGcc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 20797 | 0.7 | 0.138257 |
Target: 5'- cGCGGUagCGUGGUCcaaUC-ACCUGGGCCa- -3' miRNA: 3'- -CGCCA--GCGCCGG---AGcUGGACCCGGcc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 32410 | 0.7 | 0.145782 |
Target: 5'- -aGGUUGCGGgcguCCUCcagaGACacuggCUGGGCCGGa -3' miRNA: 3'- cgCCAGCGCC----GGAG----CUG-----GACCCGGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 34772 | 0.69 | 0.157771 |
Target: 5'- gGCGGU--UGGUUUCGACCaGGGCCa- -3' miRNA: 3'- -CGCCAgcGCCGGAGCUGGaCCCGGcc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 28161 | 0.69 | 0.161961 |
Target: 5'- aCGGUCG-GcGCCUCGgcuguauccGCCUcGGCCGGc -3' miRNA: 3'- cGCCAGCgC-CGGAGC---------UGGAcCCGGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 14545 | 0.69 | 0.161961 |
Target: 5'- gGUGGUCGU--CCUUGACCUGGGUg-- -3' miRNA: 3'- -CGCCAGCGccGGAGCUGGACCCGgcc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 34854 | 0.69 | 0.161961 |
Target: 5'- cGCGG-CGCGGguuucCUUCGGCa-GGGCCGa -3' miRNA: 3'- -CGCCaGCGCC-----GGAGCUGgaCCCGGCc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 26713 | 0.69 | 0.167996 |
Target: 5'- cGgGGUgGCcaagGGCgccugggacgaaaugCUCGGCgUGGGCCGGa -3' miRNA: 3'- -CgCCAgCG----CCG---------------GAGCUGgACCCGGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 15881 | 0.69 | 0.170644 |
Target: 5'- aGUGGUUGCcgcaGGCCuUCGACCaccGGCCGc -3' miRNA: 3'- -CGCCAGCG----CCGG-AGCUGGac-CCGGCc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 14311 | 0.69 | 0.170644 |
Target: 5'- aGCGGaugCGCGGCCuUCGACac-GGCCc- -3' miRNA: 3'- -CGCCa--GCGCCGG-AGCUGgacCCGGcc -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 23522 | 0.69 | 0.170644 |
Target: 5'- cGCGG-CGCcgcaauGGCUUCGugCUGGccguCCGGg -3' miRNA: 3'- -CGCCaGCG------CCGGAGCugGACCc---GGCC- -5' |
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23159 | 5' | -63.7 | NC_005178.1 | + | 18185 | 0.69 | 0.174685 |
Target: 5'- gGCGGUucggcugCGCGGUggCGuCUaUGGGCCGGg -3' miRNA: 3'- -CGCCA-------GCGCCGgaGCuGG-ACCCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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