miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23159 5' -63.7 NC_005178.1 + 1548 0.68 0.189264
Target:  5'- -aGuGUCGC--CCUCGGCCUGG-CCGGa -3'
miRNA:   3'- cgC-CAGCGccGGAGCUGGACCcGGCC- -5'
23159 5' -63.7 NC_005178.1 + 2141 0.7 0.138257
Target:  5'- uCGGUgGCGGCCagCG-CCgGGGCCa- -3'
miRNA:   3'- cGCCAgCGCCGGa-GCuGGaCCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 5500 0.67 0.237759
Target:  5'- cGCGGUCGCcaguugcgagacGGUggCGACCaGGGUCaGGu -3'
miRNA:   3'- -CGCCAGCG------------CCGgaGCUGGaCCCGG-CC- -5'
23159 5' -63.7 NC_005178.1 + 9022 0.7 0.127636
Target:  5'- cGCGccGUUGcCGGCUUCGACCUGGagcaauGCCGc -3'
miRNA:   3'- -CGC--CAGC-GCCGGAGCUGGACC------CGGCc -5'
23159 5' -63.7 NC_005178.1 + 9959 0.77 0.043712
Target:  5'- aGCGcGUCGCuguaGGCCUUGauGCCUGGGCCu- -3'
miRNA:   3'- -CGC-CAGCG----CCGGAGC--UGGACCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 11146 0.66 0.262464
Target:  5'- cGCGGgCGCccuGGCCgcCGcCCUGGGCUu- -3'
miRNA:   3'- -CGCCaGCG---CCGGa-GCuGGACCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 12096 0.67 0.226153
Target:  5'- aGUGGUCGCguggcgGGCCU-GGCCgaUGGGCgCGc -3'
miRNA:   3'- -CGCCAGCG------CCGGAgCUGG--ACCCG-GCc -5'
23159 5' -63.7 NC_005178.1 + 14103 0.66 0.256098
Target:  5'- cCGGgCGCccuGGCCgUCGcCCUGGGCguCGGc -3'
miRNA:   3'- cGCCaGCG---CCGG-AGCuGGACCCG--GCC- -5'
23159 5' -63.7 NC_005178.1 + 14311 0.69 0.170644
Target:  5'- aGCGGaugCGCGGCCuUCGACac-GGCCc- -3'
miRNA:   3'- -CGCCa--GCGCCGG-AGCUGgacCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 14545 0.69 0.161961
Target:  5'- gGUGGUCGU--CCUUGACCUGGGUg-- -3'
miRNA:   3'- -CGCCAGCGccGGAGCUGGACCCGgcc -5'
23159 5' -63.7 NC_005178.1 + 15680 0.66 0.24986
Target:  5'- aGCGcaagCGCGcuguCCUCGGCCUGGaCUGGa -3'
miRNA:   3'- -CGCca--GCGCc---GGAGCUGGACCcGGCC- -5'
23159 5' -63.7 NC_005178.1 + 15881 0.69 0.170644
Target:  5'- aGUGGUUGCcgcaGGCCuUCGACCaccGGCCGc -3'
miRNA:   3'- -CGCCAGCG----CCGG-AGCUGGac-CCGGCc -5'
23159 5' -63.7 NC_005178.1 + 16199 0.67 0.226153
Target:  5'- aGCGGUgacCGGCCUCGGCCau-GCCGc -3'
miRNA:   3'- -CGCCAgc-GCCGGAGCUGGaccCGGCc -5'
23159 5' -63.7 NC_005178.1 + 16970 0.67 0.209647
Target:  5'- cUGuUCGUGGCCgacACCUGGGgCCGGc -3'
miRNA:   3'- cGCcAGCGCCGGagcUGGACCC-GGCC- -5'
23159 5' -63.7 NC_005178.1 + 17084 0.74 0.066373
Target:  5'- gGCGGUgGCGGCggcgaucugCUCGAcguccgcguCCUGGGCCaGGc -3'
miRNA:   3'- -CGCCAgCGCCG---------GAGCU---------GGACCCGG-CC- -5'
23159 5' -63.7 NC_005178.1 + 17308 0.66 0.268958
Target:  5'- -aGGUCGCGGCCgcUCGGCgUGcgagaGGCUc- -3'
miRNA:   3'- cgCCAGCGCCGG--AGCUGgAC-----CCGGcc -5'
23159 5' -63.7 NC_005178.1 + 17313 0.66 0.256098
Target:  5'- aGUGGUUGC-GCCggaCGGCg-GGGCCGa -3'
miRNA:   3'- -CGCCAGCGcCGGa--GCUGgaCCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 18185 0.69 0.174685
Target:  5'- gGCGGUucggcugCGCGGUggCGuCUaUGGGCCGGg -3'
miRNA:   3'- -CGCCA-------GCGCCGgaGCuGG-ACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 20715 0.71 0.1116
Target:  5'- aGCGG-CGCgaccaggcuaucGGCCUgGuuuugcauguCCUGGGCCGGc -3'
miRNA:   3'- -CGCCaGCG------------CCGGAgCu---------GGACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 20797 0.7 0.138257
Target:  5'- cGCGGUagCGUGGUCcaaUC-ACCUGGGCCa- -3'
miRNA:   3'- -CGCCA--GCGCCGG---AGcUGGACCCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.