miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23159 5' -63.7 NC_005178.1 + 30799 1.1 0.000097
Target:  5'- aGCGGUCGCGGCCUCGACCUGGGCCGGc -3'
miRNA:   3'- -CGCCAGCGCCGGAGCUGGACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 34521 0.66 0.275581
Target:  5'- cGCGGUCGCuGCgUCG-Ca-GGGgCGGc -3'
miRNA:   3'- -CGCCAGCGcCGgAGCuGgaCCCgGCC- -5'
23159 5' -63.7 NC_005178.1 + 11146 0.66 0.262464
Target:  5'- cGCGGgCGCccuGGCCgcCGcCCUGGGCUu- -3'
miRNA:   3'- -CGCCaGCG---CCGGa-GCuGGACCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 17313 0.66 0.256098
Target:  5'- aGUGGUUGC-GCCggaCGGCg-GGGCCGa -3'
miRNA:   3'- -CGCCAGCGcCGGa--GCUGgaCCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 15680 0.66 0.24986
Target:  5'- aGCGcaagCGCGcuguCCUCGGCCUGGaCUGGa -3'
miRNA:   3'- -CGCca--GCGCc---GGAGCUGGACCcGGCC- -5'
23159 5' -63.7 NC_005178.1 + 16199 0.67 0.226153
Target:  5'- aGCGGUgacCGGCCUCGGCCau-GCCGc -3'
miRNA:   3'- -CGCCAgc-GCCGGAGCUGGaccCGGCc -5'
23159 5' -63.7 NC_005178.1 + 12096 0.67 0.226153
Target:  5'- aGUGGUCGCguggcgGGCCU-GGCCgaUGGGCgCGc -3'
miRNA:   3'- -CGCCAGCG------CCGGAgCUGG--ACCCG-GCc -5'
23159 5' -63.7 NC_005178.1 + 31918 0.67 0.220532
Target:  5'- cCGGUCauCGGCCaucgcugaUCGGCaUGGGCCGa -3'
miRNA:   3'- cGCCAGc-GCCGG--------AGCUGgACCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 16970 0.67 0.209647
Target:  5'- cUGuUCGUGGCCgacACCUGGGgCCGGc -3'
miRNA:   3'- cGCcAGCGCCGGagcUGGACCC-GGCC- -5'
23159 5' -63.7 NC_005178.1 + 26824 0.68 0.189264
Target:  5'- uGUGGccagCGgGGCUgucuUCGGCCcguUGGGCUGGu -3'
miRNA:   3'- -CGCCa---GCgCCGG----AGCUGG---ACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 9022 0.7 0.127636
Target:  5'- cGCGccGUUGcCGGCUUCGACCUGGagcaauGCCGc -3'
miRNA:   3'- -CGC--CAGC-GCCGGAGCUGGACC------CGGCc -5'
23159 5' -63.7 NC_005178.1 + 28161 0.69 0.161961
Target:  5'- aCGGUCG-GcGCCUCGgcuguauccGCCUcGGCCGGc -3'
miRNA:   3'- cGCCAGCgC-CGGAGC---------UGGAcCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 26713 0.69 0.167996
Target:  5'- cGgGGUgGCcaagGGCgccugggacgaaaugCUCGGCgUGGGCCGGa -3'
miRNA:   3'- -CgCCAgCG----CCG---------------GAGCUGgACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 14311 0.69 0.170644
Target:  5'- aGCGGaugCGCGGCCuUCGACac-GGCCc- -3'
miRNA:   3'- -CGCCa--GCGCCGG-AGCUGgacCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 15881 0.69 0.170644
Target:  5'- aGUGGUUGCcgcaGGCCuUCGACCaccGGCCGc -3'
miRNA:   3'- -CGCCAGCG----CCGG-AGCUGGac-CCGGCc -5'
23159 5' -63.7 NC_005178.1 + 18185 0.69 0.174685
Target:  5'- gGCGGUucggcugCGCGGUggCGuCUaUGGGCCGGg -3'
miRNA:   3'- -CGCCA-------GCGCCGgaGCuGG-ACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 33186 0.66 0.285071
Target:  5'- -gGGUCGCGGCgCUgcgCGACCggaguugcucgggggUGaucgugccgaGGCCGGg -3'
miRNA:   3'- cgCCAGCGCCG-GA---GCUGG---------------AC----------CCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 23703 0.74 0.066189
Target:  5'- cGgGGUCGaaaccugcgaccuCGGCCUCGAUCUGGcGgCGGa -3'
miRNA:   3'- -CgCCAGC-------------GCCGGAGCUGGACC-CgGCC- -5'
23159 5' -63.7 NC_005178.1 + 17084 0.74 0.066373
Target:  5'- gGCGGUgGCGGCggcgaucugCUCGAcguccgcguCCUGGGCCaGGc -3'
miRNA:   3'- -CGCCAgCGCCG---------GAGCU---------GGACCCGG-CC- -5'
23159 5' -63.7 NC_005178.1 + 30476 0.71 0.1116
Target:  5'- -aGGUCaCcGCCUCGcCCaGGGCCGGg -3'
miRNA:   3'- cgCCAGcGcCGGAGCuGGaCCCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.