miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23159 5' -63.7 NC_005178.1 + 35580 0.66 0.274913
Target:  5'- aGCGGUuccCGC-GCCacgucggaaagauUCGGCUcacGGGCCGGa -3'
miRNA:   3'- -CGCCA---GCGcCGG-------------AGCUGGa--CCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 34854 0.69 0.161961
Target:  5'- cGCGG-CGCGGguuucCUUCGGCa-GGGCCGa -3'
miRNA:   3'- -CGCCaGCGCC-----GGAGCUGgaCCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 34772 0.69 0.157771
Target:  5'- gGCGGU--UGGUUUCGACCaGGGCCa- -3'
miRNA:   3'- -CGCCAgcGCCGGAGCUGGaCCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 34521 0.66 0.275581
Target:  5'- cGCGGUCGCuGCgUCG-Ca-GGGgCGGc -3'
miRNA:   3'- -CGCCAGCGcCGgAGCuGgaCCCgGCC- -5'
23159 5' -63.7 NC_005178.1 + 33186 0.66 0.285071
Target:  5'- -gGGUCGCGGCgCUgcgCGACCggaguugcucgggggUGaucgugccgaGGCCGGg -3'
miRNA:   3'- cgCCAGCGCCG-GA---GCUGG---------------AC----------CCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 33094 0.68 0.199228
Target:  5'- aGCGGUCGgcaGGgUgaaGACCUGGGCgGu -3'
miRNA:   3'- -CGCCAGCg--CCgGag-CUGGACCCGgCc -5'
23159 5' -63.7 NC_005178.1 + 32410 0.7 0.145782
Target:  5'- -aGGUUGCGGgcguCCUCcagaGACacuggCUGGGCCGGa -3'
miRNA:   3'- cgCCAGCGCC----GGAG----CUG-----GACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 32284 0.68 0.199228
Target:  5'- aCGGUgGCGGCCUCGGCCaacuGCUccaGGu -3'
miRNA:   3'- cGCCAgCGCCGGAGCUGGacc-CGG---CC- -5'
23159 5' -63.7 NC_005178.1 + 31918 0.67 0.220532
Target:  5'- cCGGUCauCGGCCaucgcugaUCGGCaUGGGCCGa -3'
miRNA:   3'- cGCCAGc-GCCGG--------AGCUGgACCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 31663 0.66 0.262464
Target:  5'- gGCGG-CGCGucucgcGCUggacgaugggCGGCCgaGGGCCGGu -3'
miRNA:   3'- -CGCCaGCGC------CGGa---------GCUGGa-CCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 31054 0.71 0.12098
Target:  5'- aCGGUgGCGGCggUGACCU-GGCCGa -3'
miRNA:   3'- cGCCAgCGCCGgaGCUGGAcCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 30799 1.1 0.000097
Target:  5'- aGCGGUCGCGGCCUCGACCUGGGCCGGc -3'
miRNA:   3'- -CGCCAGCGCCGGAGCUGGACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 30476 0.71 0.1116
Target:  5'- -aGGUCaCcGCCUCGcCCaGGGCCGGg -3'
miRNA:   3'- cgCCAGcGcCGGAGCuGGaCCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 28703 0.66 0.256098
Target:  5'- cGCGGUCgGUGGCgUCGgggcucacACCcGGcacgcGCCGGg -3'
miRNA:   3'- -CGCCAG-CGCCGgAGC--------UGGaCC-----CGGCC- -5'
23159 5' -63.7 NC_005178.1 + 28161 0.69 0.161961
Target:  5'- aCGGUCG-GcGCCUCGgcuguauccGCCUcGGCCGGc -3'
miRNA:   3'- cGCCAGCgC-CGGAGC---------UGGAcCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 26824 0.68 0.189264
Target:  5'- uGUGGccagCGgGGCUgucuUCGGCCcguUGGGCUGGu -3'
miRNA:   3'- -CGCCa---GCgCCGG----AGCUGG---ACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 26713 0.69 0.167996
Target:  5'- cGgGGUgGCcaagGGCgccugggacgaaaugCUCGGCgUGGGCCGGa -3'
miRNA:   3'- -CgCCAgCG----CCG---------------GAGCUGgACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 25736 0.68 0.20438
Target:  5'- cGCGGUCaccaggGCGGCCagggUGuCCUGguccaugugcaGGCCGGc -3'
miRNA:   3'- -CGCCAG------CGCCGGa---GCuGGAC-----------CCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 25315 0.67 0.243747
Target:  5'- uUGGUCGCugucGGCCcgcUUGGCCaGGcGCUGGa -3'
miRNA:   3'- cGCCAGCG----CCGG---AGCUGGaCC-CGGCC- -5'
23159 5' -63.7 NC_005178.1 + 25169 0.66 0.268958
Target:  5'- aCGGUUGagccaaGGCCgccgguagUGGCCUGGGCgGc -3'
miRNA:   3'- cGCCAGCg-----CCGGa-------GCUGGACCCGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.