Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23160 | 5' | -59.5 | NC_005178.1 | + | 31290 | 1.11 | 0.000162 |
Target: 5'- cGAAUCAGCCGUGACCCAGCGCCGGGCu -3' miRNA: 3'- -CUUAGUCGGCACUGGGUCGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 14145 | 0.77 | 0.068686 |
Target: 5'- -cGUCAGCaCGgcuGCCCAGUGCUGGGUg -3' miRNA: 3'- cuUAGUCG-GCac-UGGGUCGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 20734 | 0.76 | 0.072773 |
Target: 5'- -cAUC-GCCGcccUGACCCaacagcagAGCGCCGGGCg -3' miRNA: 3'- cuUAGuCGGC---ACUGGG--------UCGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 30476 | 0.74 | 0.114923 |
Target: 5'- aGGUCAccGCCuc-GCCCAGgGCCGGGCa -3' miRNA: 3'- cUUAGU--CGGcacUGGGUCgCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 14069 | 0.71 | 0.164964 |
Target: 5'- uGAG-CAGCCGgccgagcagcgGGCCgGcuucGCGCCGGGCg -3' miRNA: 3'- -CUUaGUCGGCa----------CUGGgU----CGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 27443 | 0.71 | 0.171393 |
Target: 5'- ---cCAGCCacucGACCCGcucgaccuggaacauGCGCCGGGCc -3' miRNA: 3'- cuuaGUCGGca--CUGGGU---------------CGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 2124 | 0.71 | 0.178046 |
Target: 5'- cGGUCAGCgucaggcugucgGUGGCggCCAGCGCCGGGg -3' miRNA: 3'- cUUAGUCGg-----------CACUG--GGUCGCGGCCCg -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 24119 | 0.71 | 0.18393 |
Target: 5'- ----aGGUCGUGACCaaGGCGgCGGGCu -3' miRNA: 3'- cuuagUCGGCACUGGg-UCGCgGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 14902 | 0.71 | 0.179015 |
Target: 5'- ---cCAGCCGcGAcCCCAGCGCCauccuggugggaGGGUu -3' miRNA: 3'- cuuaGUCGGCaCU-GGGUCGCGG------------CCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 20384 | 0.7 | 0.209766 |
Target: 5'- ---cCAGgCGUGACgccuuggccaccgUCAGCGCuCGGGCa -3' miRNA: 3'- cuuaGUCgGCACUG-------------GGUCGCG-GCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 8814 | 0.7 | 0.210324 |
Target: 5'- aGGUCGGCaagaaaGUcGCCCGGCgcguGCCGGGUg -3' miRNA: 3'- cUUAGUCGg-----CAcUGGGUCG----CGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 7724 | 0.69 | 0.259295 |
Target: 5'- gGAGcCGGCCGaaGACCUgaagaAGCGCCuGGCg -3' miRNA: 3'- -CUUaGUCGGCa-CUGGG-----UCGCGGcCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 11757 | 0.69 | 0.227683 |
Target: 5'- ---aCGGCCGUGGCCCgAGCcauggggguuccGCCGcaGGCc -3' miRNA: 3'- cuuaGUCGGCACUGGG-UCG------------CGGC--CCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 32443 | 0.69 | 0.246239 |
Target: 5'- --uUCAGCCGUGGCgCGaucCGCUGGaGCu -3' miRNA: 3'- cuuAGUCGGCACUGgGUc--GCGGCC-CG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 34692 | 0.69 | 0.252046 |
Target: 5'- ---cCAGCCGUuccgcauccguucGACCCGGCGC--GGCa -3' miRNA: 3'- cuuaGUCGGCA-------------CUGGGUCGCGgcCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 22940 | 0.69 | 0.252698 |
Target: 5'- ---gCuGCCGcUGGCCCAGUGCCuGuGGUg -3' miRNA: 3'- cuuaGuCGGC-ACUGGGUCGCGG-C-CCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 5793 | 0.69 | 0.259295 |
Target: 5'- aGGUCGucGCCGgcauuaccucgGGCCaGGCGCUGGGCu -3' miRNA: 3'- cUUAGU--CGGCa----------CUGGgUCGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 15645 | 0.69 | 0.233733 |
Target: 5'- uGAG-CAGCaucuucgccaCGUcuUCCAGCGCCGGGCc -3' miRNA: 3'- -CUUaGUCG----------GCAcuGGGUCGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 8918 | 0.69 | 0.259295 |
Target: 5'- aGGAUCGGcCCGgcuuCCguGCGCUGGGg -3' miRNA: 3'- -CUUAGUC-GGCacu-GGguCGCGGCCCg -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 12639 | 0.68 | 0.301097 |
Target: 5'- ----aGGCCGUGcuguacgGCUCGGCGgCCGGcGCg -3' miRNA: 3'- cuuagUCGGCAC-------UGGGUCGC-GGCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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