miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 1946 0.66 0.393306
Target:  5'- -cGUCA-CCGUcGcCCCAGCuuCCGGGCc -3'
miRNA:   3'- cuUAGUcGGCA-CuGGGUCGc-GGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 2124 0.71 0.178046
Target:  5'- cGGUCAGCgucaggcugucgGUGGCggCCAGCGCCGGGg -3'
miRNA:   3'- cUUAGUCGg-----------CACUG--GGUCGCGGCCCg -5'
23160 5' -59.5 NC_005178.1 + 3231 0.67 0.341271
Target:  5'- -cGUCAGCCGcGAggUCgGGCGCaUGGGUg -3'
miRNA:   3'- cuUAGUCGGCaCU--GGgUCGCG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 5269 0.66 0.375398
Target:  5'- cAGUUGGCCGaGGCCgccaccguuCAGgGCCGGcGCg -3'
miRNA:   3'- cUUAGUCGGCaCUGG---------GUCgCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 5645 0.66 0.375398
Target:  5'- ----uGGCCGaUGACCggCAGCGCCaucccGGCg -3'
miRNA:   3'- cuuagUCGGC-ACUGG--GUCGCGGc----CCG- -5'
23160 5' -59.5 NC_005178.1 + 5793 0.69 0.259295
Target:  5'- aGGUCGucGCCGgcauuaccucgGGCCaGGCGCUGGGCu -3'
miRNA:   3'- cUUAGU--CGGCa----------CUGGgUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 6034 0.66 0.384283
Target:  5'- cGAAUCaggcggcugaAGCCGUGAUgaagaCGGUGCCGaGGg -3'
miRNA:   3'- -CUUAG----------UCGGCACUGg----GUCGCGGC-CCg -5'
23160 5' -59.5 NC_005178.1 + 6219 0.66 0.375398
Target:  5'- ----gAGCCGUGGgUuCAGuCGUCGGGCc -3'
miRNA:   3'- cuuagUCGGCACUgG-GUC-GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 6248 0.68 0.27291
Target:  5'- ---cCAGgCGcauaGCCCGGCGCUGGGUc -3'
miRNA:   3'- cuuaGUCgGCac--UGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 7507 0.66 0.366653
Target:  5'- ---aUAGCgCGUGaaugGCCCGGCGCUGaGCu -3'
miRNA:   3'- cuuaGUCG-GCAC----UGGGUCGCGGCcCG- -5'
23160 5' -59.5 NC_005178.1 + 7710 0.67 0.333097
Target:  5'- aGGcgCGGUCgGUGACCCAGCcaaGGGUu -3'
miRNA:   3'- -CUuaGUCGG-CACUGGGUCGcggCCCG- -5'
23160 5' -59.5 NC_005178.1 + 7724 0.69 0.259295
Target:  5'- gGAGcCGGCCGaaGACCUgaagaAGCGCCuGGCg -3'
miRNA:   3'- -CUUaGUCGGCa-CUGGG-----UCGCGGcCCG- -5'
23160 5' -59.5 NC_005178.1 + 8060 0.67 0.349588
Target:  5'- -uAUCGGCCGcaGCCCAGCGggaGGaGCg -3'
miRNA:   3'- cuUAGUCGGCacUGGGUCGCgg-CC-CG- -5'
23160 5' -59.5 NC_005178.1 + 8814 0.7 0.210324
Target:  5'- aGGUCGGCaagaaaGUcGCCCGGCgcguGCCGGGUg -3'
miRNA:   3'- cUUAGUCGg-----CAcUGGGUCG----CGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 8918 0.69 0.259295
Target:  5'- aGGAUCGGcCCGgcuuCCguGCGCUGGGg -3'
miRNA:   3'- -CUUAGUC-GGCacu-GGguCGCGGCCCg -5'
23160 5' -59.5 NC_005178.1 + 9637 0.67 0.336349
Target:  5'- gGAGUCGauguagucagcgaacGCCGacgucgccccguUGACCCAGuUGCCcuGGGCg -3'
miRNA:   3'- -CUUAGU---------------CGGC------------ACUGGGUC-GCGG--CCCG- -5'
23160 5' -59.5 NC_005178.1 + 10319 0.68 0.27291
Target:  5'- ---aUAGCCGagGGCCgGGCGCggagGGGCg -3'
miRNA:   3'- cuuaGUCGGCa-CUGGgUCGCGg---CCCG- -5'
23160 5' -59.5 NC_005178.1 + 11757 0.69 0.227683
Target:  5'- ---aCGGCCGUGGCCCgAGCcauggggguuccGCCGcaGGCc -3'
miRNA:   3'- cuuaGUCGGCACUGGG-UCG------------CGGC--CCG- -5'
23160 5' -59.5 NC_005178.1 + 12639 0.68 0.301097
Target:  5'- ----aGGCCGUGcuguacgGCUCGGCGgCCGGcGCg -3'
miRNA:   3'- cuuagUCGGCAC-------UGGGUCGC-GGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 12958 0.67 0.349588
Target:  5'- ---cCGGCCugGUGACCCAGU-CCaGGCc -3'
miRNA:   3'- cuuaGUCGG--CACUGGGUCGcGGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.