miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 14069 0.71 0.164964
Target:  5'- uGAG-CAGCCGgccgagcagcgGGCCgGcuucGCGCCGGGCg -3'
miRNA:   3'- -CUUaGUCGGCa----------CUGGgU----CGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 14145 0.77 0.068686
Target:  5'- -cGUCAGCaCGgcuGCCCAGUGCUGGGUg -3'
miRNA:   3'- cuUAGUCG-GCac-UGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 14851 0.66 0.35805
Target:  5'- --cUCGGCaGcGACCCGGCGauccagcucggcCUGGGCg -3'
miRNA:   3'- cuuAGUCGgCaCUGGGUCGC------------GGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 14902 0.71 0.179015
Target:  5'- ---cCAGCCGcGAcCCCAGCGCCauccuggugggaGGGUu -3'
miRNA:   3'- cuuaGUCGGCaCU-GGGUCGCGG------------CCCG- -5'
23160 5' -59.5 NC_005178.1 + 15645 0.69 0.233733
Target:  5'- uGAG-CAGCaucuucgccaCGUcuUCCAGCGCCGGGCc -3'
miRNA:   3'- -CUUaGUCG----------GCAcuGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 16280 0.66 0.375398
Target:  5'- --cUCGGCCGagccguucaUGGCCaugauGCGCUGGuGCg -3'
miRNA:   3'- cuuAGUCGGC---------ACUGGgu---CGCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 16987 0.67 0.325067
Target:  5'- aGGUCAgcGCCGcGACCUGGCccuggaGCUGGGUg -3'
miRNA:   3'- cUUAGU--CGGCaCUGGGUCG------CGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 17216 0.66 0.402465
Target:  5'- --cUCGGUCGUGccuucuUCCAGCGacaGGGCc -3'
miRNA:   3'- cuuAGUCGGCACu-----GGGUCGCgg-CCCG- -5'
23160 5' -59.5 NC_005178.1 + 17617 0.68 0.265352
Target:  5'- -cGUC-GCCGUGGucugacggucgagUCCAGCGCCGG-Ca -3'
miRNA:   3'- cuUAGuCGGCACU-------------GGGUCGCGGCCcG- -5'
23160 5' -59.5 NC_005178.1 + 18990 0.68 0.294398
Target:  5'- cGGUCGGCgcggguUGUGAUCgAGCGCgccaGGGCg -3'
miRNA:   3'- cUUAGUCG------GCACUGGgUCGCGg---CCCG- -5'
23160 5' -59.5 NC_005178.1 + 20384 0.7 0.209766
Target:  5'- ---cCAGgCGUGACgccuuggccaccgUCAGCGCuCGGGCa -3'
miRNA:   3'- cuuaGUCgGCACUG-------------GGUCGCG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 20734 0.76 0.072773
Target:  5'- -cAUC-GCCGcccUGACCCaacagcagAGCGCCGGGCg -3'
miRNA:   3'- cuUAGuCGGC---ACUGGG--------UCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 21983 0.66 0.375398
Target:  5'- cGAUCAGgaUGUGAgCCAGCuugGCUGGGg -3'
miRNA:   3'- cUUAGUCg-GCACUgGGUCG---CGGCCCg -5'
23160 5' -59.5 NC_005178.1 + 22259 0.67 0.333097
Target:  5'- ----aAGCCGaccgccaggcUGGCCCgccaGGCGgCGGGCg -3'
miRNA:   3'- cuuagUCGGC----------ACUGGG----UCGCgGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 22872 0.67 0.309444
Target:  5'- ---gCGGUCGUGGCCCAGgcuauCGCCGauGCg -3'
miRNA:   3'- cuuaGUCGGCACUGGGUC-----GCGGCc-CG- -5'
23160 5' -59.5 NC_005178.1 + 22940 0.69 0.252698
Target:  5'- ---gCuGCCGcUGGCCCAGUGCCuGuGGUg -3'
miRNA:   3'- cuuaGuCGGC-ACUGGGUCGCGG-C-CCG- -5'
23160 5' -59.5 NC_005178.1 + 23283 0.66 0.366653
Target:  5'- cGAUCuGGCCacccuUGACgaaCAGCGCCaGGGCu -3'
miRNA:   3'- cUUAG-UCGGc----ACUGg--GUCGCGG-CCCG- -5'
23160 5' -59.5 NC_005178.1 + 23390 0.68 0.27993
Target:  5'- cGAuUCAGaCgGUcACCCAGCaCUGGGCa -3'
miRNA:   3'- -CUuAGUC-GgCAcUGGGUCGcGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23656 0.67 0.325067
Target:  5'- ---aUAGuCCGcgcUGGCCCGuucaCGCCGGGCg -3'
miRNA:   3'- cuuaGUC-GGC---ACUGGGUc---GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 24119 0.71 0.18393
Target:  5'- ----aGGUCGUGACCaaGGCGgCGGGCu -3'
miRNA:   3'- cuuagUCGGCACUGGg-UCGCgGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.