Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23160 | 5' | -59.5 | NC_005178.1 | + | 6248 | 0.68 | 0.27291 |
Target: 5'- ---cCAGgCGcauaGCCCGGCGCUGGGUc -3' miRNA: 3'- cuuaGUCgGCac--UGGGUCGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 10319 | 0.68 | 0.27291 |
Target: 5'- ---aUAGCCGagGGCCgGGCGCggagGGGCg -3' miRNA: 3'- cuuaGUCGGCa-CUGGgUCGCGg---CCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 32809 | 0.68 | 0.27993 |
Target: 5'- ----gGGCCGUaGAagcagaCCAG-GCCGGGCa -3' miRNA: 3'- cuuagUCGGCA-CUg-----GGUCgCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 23390 | 0.68 | 0.27993 |
Target: 5'- cGAuUCAGaCgGUcACCCAGCaCUGGGCa -3' miRNA: 3'- -CUuAGUC-GgCAcUGGGUCGcGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 28705 | 0.68 | 0.287092 |
Target: 5'- cGGUCGGUggCGUcggGGCUCAcacccggcacGCGCCGGGCg -3' miRNA: 3'- cUUAGUCG--GCA---CUGGGU----------CGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 18990 | 0.68 | 0.294398 |
Target: 5'- cGGUCGGCgcggguUGUGAUCgAGCGCgccaGGGCg -3' miRNA: 3'- cUUAGUCG------GCACUGGgUCGCGg---CCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 12639 | 0.68 | 0.301097 |
Target: 5'- ----aGGCCGUGcuguacgGCUCGGCGgCCGGcGCg -3' miRNA: 3'- cuuagUCGGCAC-------UGGGUCGC-GGCC-CG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 26898 | 0.68 | 0.301849 |
Target: 5'- aGggUCGGCgCGgaGACgCCGGC-CgGGGCg -3' miRNA: 3'- -CuuAGUCG-GCa-CUG-GGUCGcGgCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 22872 | 0.67 | 0.309444 |
Target: 5'- ---gCGGUCGUGGCCCAGgcuauCGCCGauGCg -3' miRNA: 3'- cuuaGUCGGCACUGGGUC-----GCGGCc-CG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 30033 | 0.67 | 0.309444 |
Target: 5'- ---aUAGCgca-GCUCAGCGCCGGGCc -3' miRNA: 3'- cuuaGUCGgcacUGGGUCGCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 23656 | 0.67 | 0.325067 |
Target: 5'- ---aUAGuCCGcgcUGGCCCGuucaCGCCGGGCg -3' miRNA: 3'- cuuaGUC-GGC---ACUGGGUc---GCGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 16987 | 0.67 | 0.325067 |
Target: 5'- aGGUCAgcGCCGcGACCUGGCccuggaGCUGGGUg -3' miRNA: 3'- cUUAGU--CGGCaCUGGGUCG------CGGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 22259 | 0.67 | 0.333097 |
Target: 5'- ----aAGCCGaccgccaggcUGGCCCgccaGGCGgCGGGCg -3' miRNA: 3'- cuuagUCGGC----------ACUGGG----UCGCgGCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 7710 | 0.67 | 0.333097 |
Target: 5'- aGGcgCGGUCgGUGACCCAGCcaaGGGUu -3' miRNA: 3'- -CUuaGUCGG-CACUGGGUCGcggCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 9637 | 0.67 | 0.336349 |
Target: 5'- gGAGUCGauguagucagcgaacGCCGacgucgccccguUGACCCAGuUGCCcuGGGCg -3' miRNA: 3'- -CUUAGU---------------CGGC------------ACUGGGUC-GCGG--CCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 3231 | 0.67 | 0.341271 |
Target: 5'- -cGUCAGCCGcGAggUCgGGCGCaUGGGUg -3' miRNA: 3'- cuUAGUCGGCaCU--GGgUCGCG-GCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 12958 | 0.67 | 0.349588 |
Target: 5'- ---cCGGCCugGUGACCCAGU-CCaGGCc -3' miRNA: 3'- cuuaGUCGG--CACUGGGUCGcGGcCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 24450 | 0.67 | 0.349588 |
Target: 5'- ---aUAGCgGUGG-CCAGCGCugauguuuCGGGCa -3' miRNA: 3'- cuuaGUCGgCACUgGGUCGCG--------GCCCG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 8060 | 0.67 | 0.349588 |
Target: 5'- -uAUCGGCCGcaGCCCAGCGggaGGaGCg -3' miRNA: 3'- cuUAGUCGGCacUGGGUCGCgg-CC-CG- -5' |
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23160 | 5' | -59.5 | NC_005178.1 | + | 28952 | 0.67 | 0.352956 |
Target: 5'- ---aCGGCCaucgccgugcgccagGUGACCCugcGCGCCccuggccuGGGCg -3' miRNA: 3'- cuuaGUCGG---------------CACUGGGu--CGCGG--------CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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