miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 22259 0.67 0.333097
Target:  5'- ----aAGCCGaccgccaggcUGGCCCgccaGGCGgCGGGCg -3'
miRNA:   3'- cuuagUCGGC----------ACUGGG----UCGCgGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 7710 0.67 0.333097
Target:  5'- aGGcgCGGUCgGUGACCCAGCcaaGGGUu -3'
miRNA:   3'- -CUuaGUCGG-CACUGGGUCGcggCCCG- -5'
23160 5' -59.5 NC_005178.1 + 16987 0.67 0.325067
Target:  5'- aGGUCAgcGCCGcGACCUGGCccuggaGCUGGGUg -3'
miRNA:   3'- cUUAGU--CGGCaCUGGGUCG------CGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23656 0.67 0.325067
Target:  5'- ---aUAGuCCGcgcUGGCCCGuucaCGCCGGGCg -3'
miRNA:   3'- cuuaGUC-GGC---ACUGGGUc---GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 30033 0.67 0.309444
Target:  5'- ---aUAGCgca-GCUCAGCGCCGGGCc -3'
miRNA:   3'- cuuaGUCGgcacUGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 22872 0.67 0.309444
Target:  5'- ---gCGGUCGUGGCCCAGgcuauCGCCGauGCg -3'
miRNA:   3'- cuuaGUCGGCACUGGGUC-----GCGGCc-CG- -5'
23160 5' -59.5 NC_005178.1 + 26898 0.68 0.301849
Target:  5'- aGggUCGGCgCGgaGACgCCGGC-CgGGGCg -3'
miRNA:   3'- -CuuAGUCG-GCa-CUG-GGUCGcGgCCCG- -5'
23160 5' -59.5 NC_005178.1 + 12639 0.68 0.301097
Target:  5'- ----aGGCCGUGcuguacgGCUCGGCGgCCGGcGCg -3'
miRNA:   3'- cuuagUCGGCAC-------UGGGUCGC-GGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 18990 0.68 0.294398
Target:  5'- cGGUCGGCgcggguUGUGAUCgAGCGCgccaGGGCg -3'
miRNA:   3'- cUUAGUCG------GCACUGGgUCGCGg---CCCG- -5'
23160 5' -59.5 NC_005178.1 + 28705 0.68 0.287092
Target:  5'- cGGUCGGUggCGUcggGGCUCAcacccggcacGCGCCGGGCg -3'
miRNA:   3'- cUUAGUCG--GCA---CUGGGU----------CGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23390 0.68 0.27993
Target:  5'- cGAuUCAGaCgGUcACCCAGCaCUGGGCa -3'
miRNA:   3'- -CUuAGUC-GgCAcUGGGUCGcGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 32809 0.68 0.27993
Target:  5'- ----gGGCCGUaGAagcagaCCAG-GCCGGGCa -3'
miRNA:   3'- cuuagUCGGCA-CUg-----GGUCgCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 6248 0.68 0.27291
Target:  5'- ---cCAGgCGcauaGCCCGGCGCUGGGUc -3'
miRNA:   3'- cuuaGUCgGCac--UGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 10319 0.68 0.27291
Target:  5'- ---aUAGCCGagGGCCgGGCGCggagGGGCg -3'
miRNA:   3'- cuuaGUCGGCa-CUGGgUCGCGg---CCCG- -5'
23160 5' -59.5 NC_005178.1 + 17617 0.68 0.265352
Target:  5'- -cGUC-GCCGUGGucugacggucgagUCCAGCGCCGG-Ca -3'
miRNA:   3'- cuUAGuCGGCACU-------------GGGUCGCGGCCcG- -5'
23160 5' -59.5 NC_005178.1 + 5793 0.69 0.259295
Target:  5'- aGGUCGucGCCGgcauuaccucgGGCCaGGCGCUGGGCu -3'
miRNA:   3'- cUUAGU--CGGCa----------CUGGgUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 7724 0.69 0.259295
Target:  5'- gGAGcCGGCCGaaGACCUgaagaAGCGCCuGGCg -3'
miRNA:   3'- -CUUaGUCGGCa-CUGGG-----UCGCGGcCCG- -5'
23160 5' -59.5 NC_005178.1 + 8918 0.69 0.259295
Target:  5'- aGGAUCGGcCCGgcuuCCguGCGCUGGGg -3'
miRNA:   3'- -CUUAGUC-GGCacu-GGguCGCGGCCCg -5'
23160 5' -59.5 NC_005178.1 + 22940 0.69 0.252698
Target:  5'- ---gCuGCCGcUGGCCCAGUGCCuGuGGUg -3'
miRNA:   3'- cuuaGuCGGC-ACUGGGUCGCGG-C-CCG- -5'
23160 5' -59.5 NC_005178.1 + 34692 0.69 0.252046
Target:  5'- ---cCAGCCGUuccgcauccguucGACCCGGCGC--GGCa -3'
miRNA:   3'- cuuaGUCGGCA-------------CUGGGUCGCGgcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.