miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 34692 0.69 0.252046
Target:  5'- ---cCAGCCGUuccgcauccguucGACCCGGCGC--GGCa -3'
miRNA:   3'- cuuaGUCGGCA-------------CUGGGUCGCGgcCCG- -5'
23160 5' -59.5 NC_005178.1 + 33927 0.66 0.384283
Target:  5'- ---gCGGCCG-GugCCGGCuuuCCGGGg -3'
miRNA:   3'- cuuaGUCGGCaCugGGUCGc--GGCCCg -5'
23160 5' -59.5 NC_005178.1 + 33485 0.66 0.402465
Target:  5'- uGGUC-GCCGUGGaauuccUCCAGCuCgCGGGCg -3'
miRNA:   3'- cUUAGuCGGCACU------GGGUCGcG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 32809 0.68 0.27993
Target:  5'- ----gGGCCGUaGAagcagaCCAG-GCCGGGCa -3'
miRNA:   3'- cuuagUCGGCA-CUg-----GGUCgCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 32443 0.69 0.246239
Target:  5'- --uUCAGCCGUGGCgCGaucCGCUGGaGCu -3'
miRNA:   3'- cuuAGUCGGCACUGgGUc--GCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 31290 1.11 0.000162
Target:  5'- cGAAUCAGCCGUGACCCAGCGCCGGGCu -3'
miRNA:   3'- -CUUAGUCGGCACUGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 30476 0.74 0.114923
Target:  5'- aGGUCAccGCCuc-GCCCAGgGCCGGGCa -3'
miRNA:   3'- cUUAGU--CGGcacUGGGUCgCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 30033 0.67 0.309444
Target:  5'- ---aUAGCgca-GCUCAGCGCCGGGCc -3'
miRNA:   3'- cuuaGUCGgcacUGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 28952 0.67 0.352956
Target:  5'- ---aCGGCCaucgccgugcgccagGUGACCCugcGCGCCccuggccuGGGCg -3'
miRNA:   3'- cuuaGUCGG---------------CACUGGGu--CGCGG--------CCCG- -5'
23160 5' -59.5 NC_005178.1 + 28705 0.68 0.287092
Target:  5'- cGGUCGGUggCGUcggGGCUCAcacccggcacGCGCCGGGCg -3'
miRNA:   3'- cUUAGUCG--GCA---CUGGGU----------CGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 27443 0.71 0.171393
Target:  5'- ---cCAGCCacucGACCCGcucgaccuggaacauGCGCCGGGCc -3'
miRNA:   3'- cuuaGUCGGca--CUGGGU---------------CGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 26898 0.68 0.301849
Target:  5'- aGggUCGGCgCGgaGACgCCGGC-CgGGGCg -3'
miRNA:   3'- -CuuAGUCG-GCa-CUG-GGUCGcGgCCCG- -5'
23160 5' -59.5 NC_005178.1 + 25812 0.66 0.393306
Target:  5'- ---aCGGCCGUGGCauauGCGC-GGGUg -3'
miRNA:   3'- cuuaGUCGGCACUGggu-CGCGgCCCG- -5'
23160 5' -59.5 NC_005178.1 + 24450 0.67 0.349588
Target:  5'- ---aUAGCgGUGG-CCAGCGCugauguuuCGGGCa -3'
miRNA:   3'- cuuaGUCGgCACUgGGUCGCG--------GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 24119 0.71 0.18393
Target:  5'- ----aGGUCGUGACCaaGGCGgCGGGCu -3'
miRNA:   3'- cuuagUCGGCACUGGg-UCGCgGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23656 0.67 0.325067
Target:  5'- ---aUAGuCCGcgcUGGCCCGuucaCGCCGGGCg -3'
miRNA:   3'- cuuaGUC-GGC---ACUGGGUc---GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23390 0.68 0.27993
Target:  5'- cGAuUCAGaCgGUcACCCAGCaCUGGGCa -3'
miRNA:   3'- -CUuAGUC-GgCAcUGGGUCGcGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23283 0.66 0.366653
Target:  5'- cGAUCuGGCCacccuUGACgaaCAGCGCCaGGGCu -3'
miRNA:   3'- cUUAG-UCGGc----ACUGg--GUCGCGG-CCCG- -5'
23160 5' -59.5 NC_005178.1 + 22940 0.69 0.252698
Target:  5'- ---gCuGCCGcUGGCCCAGUGCCuGuGGUg -3'
miRNA:   3'- cuuaGuCGGC-ACUGGGUCGCGG-C-CCG- -5'
23160 5' -59.5 NC_005178.1 + 22872 0.67 0.309444
Target:  5'- ---gCGGUCGUGGCCCAGgcuauCGCCGauGCg -3'
miRNA:   3'- cuuaGUCGGCACUGGGUC-----GCGGCc-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.