miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 28952 0.67 0.352956
Target:  5'- ---aCGGCCaucgccgugcgccagGUGACCCugcGCGCCccuggccuGGGCg -3'
miRNA:   3'- cuuaGUCGG---------------CACUGGGu--CGCGG--------CCCG- -5'
23160 5' -59.5 NC_005178.1 + 10319 0.68 0.27291
Target:  5'- ---aUAGCCGagGGCCgGGCGCggagGGGCg -3'
miRNA:   3'- cuuaGUCGGCa-CUGGgUCGCGg---CCCG- -5'
23160 5' -59.5 NC_005178.1 + 23390 0.68 0.27993
Target:  5'- cGAuUCAGaCgGUcACCCAGCaCUGGGCa -3'
miRNA:   3'- -CUuAGUC-GgCAcUGGGUCGcGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 12639 0.68 0.301097
Target:  5'- ----aGGCCGUGcuguacgGCUCGGCGgCCGGcGCg -3'
miRNA:   3'- cuuagUCGGCAC-------UGGGUCGC-GGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 22872 0.67 0.309444
Target:  5'- ---gCGGUCGUGGCCCAGgcuauCGCCGauGCg -3'
miRNA:   3'- cuuaGUCGGCACUGGGUC-----GCGGCc-CG- -5'
23160 5' -59.5 NC_005178.1 + 30033 0.67 0.309444
Target:  5'- ---aUAGCgca-GCUCAGCGCCGGGCc -3'
miRNA:   3'- cuuaGUCGgcacUGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 22259 0.67 0.333097
Target:  5'- ----aAGCCGaccgccaggcUGGCCCgccaGGCGgCGGGCg -3'
miRNA:   3'- cuuagUCGGC----------ACUGGG----UCGCgGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 3231 0.67 0.341271
Target:  5'- -cGUCAGCCGcGAggUCgGGCGCaUGGGUg -3'
miRNA:   3'- cuUAGUCGGCaCU--GGgUCGCG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 12958 0.67 0.349588
Target:  5'- ---cCGGCCugGUGACCCAGU-CCaGGCc -3'
miRNA:   3'- cuuaGUCGG--CACUGGGUCGcGGcCCG- -5'
23160 5' -59.5 NC_005178.1 + 17617 0.68 0.265352
Target:  5'- -cGUC-GCCGUGGucugacggucgagUCCAGCGCCGG-Ca -3'
miRNA:   3'- cuUAGuCGGCACU-------------GGGUCGCGGCCcG- -5'
23160 5' -59.5 NC_005178.1 + 8918 0.69 0.259295
Target:  5'- aGGAUCGGcCCGgcuuCCguGCGCUGGGg -3'
miRNA:   3'- -CUUAGUC-GGCacu-GGguCGCGGCCCg -5'
23160 5' -59.5 NC_005178.1 + 7724 0.69 0.259295
Target:  5'- gGAGcCGGCCGaaGACCUgaagaAGCGCCuGGCg -3'
miRNA:   3'- -CUUaGUCGGCa-CUGGG-----UCGCGGcCCG- -5'
23160 5' -59.5 NC_005178.1 + 20734 0.76 0.072773
Target:  5'- -cAUC-GCCGcccUGACCCaacagcagAGCGCCGGGCg -3'
miRNA:   3'- cuUAGuCGGC---ACUGGG--------UCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 14902 0.71 0.179015
Target:  5'- ---cCAGCCGcGAcCCCAGCGCCauccuggugggaGGGUu -3'
miRNA:   3'- cuuaGUCGGCaCU-GGGUCGCGG------------CCCG- -5'
23160 5' -59.5 NC_005178.1 + 24119 0.71 0.18393
Target:  5'- ----aGGUCGUGACCaaGGCGgCGGGCu -3'
miRNA:   3'- cuuagUCGGCACUGGg-UCGCgGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 8814 0.7 0.210324
Target:  5'- aGGUCGGCaagaaaGUcGCCCGGCgcguGCCGGGUg -3'
miRNA:   3'- cUUAGUCGg-----CAcUGGGUCG----CGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 11757 0.69 0.227683
Target:  5'- ---aCGGCCGUGGCCCgAGCcauggggguuccGCCGcaGGCc -3'
miRNA:   3'- cuuaGUCGGCACUGGG-UCG------------CGGC--CCG- -5'
23160 5' -59.5 NC_005178.1 + 32443 0.69 0.246239
Target:  5'- --uUCAGCCGUGGCgCGaucCGCUGGaGCu -3'
miRNA:   3'- cuuAGUCGGCACUGgGUc--GCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 34692 0.69 0.252046
Target:  5'- ---cCAGCCGUuccgcauccguucGACCCGGCGC--GGCa -3'
miRNA:   3'- cuuaGUCGGCA-------------CUGGGUCGCGgcCCG- -5'
23160 5' -59.5 NC_005178.1 + 22940 0.69 0.252698
Target:  5'- ---gCuGCCGcUGGCCCAGUGCCuGuGGUg -3'
miRNA:   3'- cuuaGuCGGC-ACUGGGUCGCGG-C-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.