miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 14145 0.77 0.068686
Target:  5'- -cGUCAGCaCGgcuGCCCAGUGCUGGGUg -3'
miRNA:   3'- cuUAGUCG-GCac-UGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 8060 0.67 0.349588
Target:  5'- -uAUCGGCCGcaGCCCAGCGggaGGaGCg -3'
miRNA:   3'- cuUAGUCGGCacUGGGUCGCgg-CC-CG- -5'
23160 5' -59.5 NC_005178.1 + 14851 0.66 0.35805
Target:  5'- --cUCGGCaGcGACCCGGCGauccagcucggcCUGGGCg -3'
miRNA:   3'- cuuAGUCGgCaCUGGGUCGC------------GGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 33485 0.66 0.402465
Target:  5'- uGGUC-GCCGUGGaauuccUCCAGCuCgCGGGCg -3'
miRNA:   3'- cUUAGuCGGCACU------GGGUCGcG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 2124 0.71 0.178046
Target:  5'- cGGUCAGCgucaggcugucgGUGGCggCCAGCGCCGGGg -3'
miRNA:   3'- cUUAGUCGg-----------CACUG--GGUCGCGGCCCg -5'
23160 5' -59.5 NC_005178.1 + 20384 0.7 0.209766
Target:  5'- ---cCAGgCGUGACgccuuggccaccgUCAGCGCuCGGGCa -3'
miRNA:   3'- cuuaGUCgGCACUG-------------GGUCGCG-GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 5793 0.69 0.259295
Target:  5'- aGGUCGucGCCGgcauuaccucgGGCCaGGCGCUGGGCu -3'
miRNA:   3'- cUUAGU--CGGCa----------CUGGgUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 6248 0.68 0.27291
Target:  5'- ---cCAGgCGcauaGCCCGGCGCUGGGUc -3'
miRNA:   3'- cuuaGUCgGCac--UGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 18990 0.68 0.294398
Target:  5'- cGGUCGGCgcggguUGUGAUCgAGCGCgccaGGGCg -3'
miRNA:   3'- cUUAGUCG------GCACUGGgUCGCGg---CCCG- -5'
23160 5' -59.5 NC_005178.1 + 9637 0.67 0.336349
Target:  5'- gGAGUCGauguagucagcgaacGCCGacgucgccccguUGACCCAGuUGCCcuGGGCg -3'
miRNA:   3'- -CUUAGU---------------CGGC------------ACUGGGUC-GCGG--CCCG- -5'
23160 5' -59.5 NC_005178.1 + 16987 0.67 0.325067
Target:  5'- aGGUCAgcGCCGcGACCUGGCccuggaGCUGGGUg -3'
miRNA:   3'- cUUAGU--CGGCaCUGGGUCG------CGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 28705 0.68 0.287092
Target:  5'- cGGUCGGUggCGUcggGGCUCAcacccggcacGCGCCGGGCg -3'
miRNA:   3'- cUUAGUCG--GCA---CUGGGU----------CGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 30476 0.74 0.114923
Target:  5'- aGGUCAccGCCuc-GCCCAGgGCCGGGCa -3'
miRNA:   3'- cUUAGU--CGGcacUGGGUCgCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23656 0.67 0.325067
Target:  5'- ---aUAGuCCGcgcUGGCCCGuucaCGCCGGGCg -3'
miRNA:   3'- cuuaGUC-GGC---ACUGGGUc---GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 14069 0.71 0.164964
Target:  5'- uGAG-CAGCCGgccgagcagcgGGCCgGcuucGCGCCGGGCg -3'
miRNA:   3'- -CUUaGUCGGCa----------CUGGgU----CGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 32809 0.68 0.27993
Target:  5'- ----gGGCCGUaGAagcagaCCAG-GCCGGGCa -3'
miRNA:   3'- cuuagUCGGCA-CUg-----GGUCgCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 7710 0.67 0.333097
Target:  5'- aGGcgCGGUCgGUGACCCAGCcaaGGGUu -3'
miRNA:   3'- -CUuaGUCGG-CACUGGGUCGcggCCCG- -5'
23160 5' -59.5 NC_005178.1 + 24450 0.67 0.349588
Target:  5'- ---aUAGCgGUGG-CCAGCGCugauguuuCGGGCa -3'
miRNA:   3'- cuuaGUCGgCACUgGGUCGCG--------GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 27443 0.71 0.171393
Target:  5'- ---cCAGCCacucGACCCGcucgaccuggaacauGCGCCGGGCc -3'
miRNA:   3'- cuuaGUCGGca--CUGGGU---------------CGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 15645 0.69 0.233733
Target:  5'- uGAG-CAGCaucuucgccaCGUcuUCCAGCGCCGGGCc -3'
miRNA:   3'- -CUUaGUCG----------GCAcuGGGUCGCGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.