miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 5' -59.5 NC_005178.1 + 1946 0.66 0.393306
Target:  5'- -cGUCA-CCGUcGcCCCAGCuuCCGGGCc -3'
miRNA:   3'- cuUAGUcGGCA-CuGGGUCGc-GGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 6248 0.68 0.27291
Target:  5'- ---cCAGgCGcauaGCCCGGCGCUGGGUc -3'
miRNA:   3'- cuuaGUCgGCac--UGGGUCGCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 8060 0.67 0.349588
Target:  5'- -uAUCGGCCGcaGCCCAGCGggaGGaGCg -3'
miRNA:   3'- cuUAGUCGGCacUGGGUCGCgg-CC-CG- -5'
23160 5' -59.5 NC_005178.1 + 7507 0.66 0.366653
Target:  5'- ---aUAGCgCGUGaaugGCCCGGCGCUGaGCu -3'
miRNA:   3'- cuuaGUCG-GCAC----UGGGUCGCGGCcCG- -5'
23160 5' -59.5 NC_005178.1 + 25812 0.66 0.393306
Target:  5'- ---aCGGCCGUGGCauauGCGC-GGGUg -3'
miRNA:   3'- cuuaGUCGGCACUGggu-CGCGgCCCG- -5'
23160 5' -59.5 NC_005178.1 + 23656 0.67 0.325067
Target:  5'- ---aUAGuCCGcgcUGGCCCGuucaCGCCGGGCg -3'
miRNA:   3'- cuuaGUC-GGC---ACUGGGUc---GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 24450 0.67 0.349588
Target:  5'- ---aUAGCgGUGG-CCAGCGCugauguuuCGGGCa -3'
miRNA:   3'- cuuaGUCGgCACUgGGUCGCG--------GCCCG- -5'
23160 5' -59.5 NC_005178.1 + 6034 0.66 0.384283
Target:  5'- cGAAUCaggcggcugaAGCCGUGAUgaagaCGGUGCCGaGGg -3'
miRNA:   3'- -CUUAG----------UCGGCACUGg----GUCGCGGC-CCg -5'
23160 5' -59.5 NC_005178.1 + 14902 0.71 0.179015
Target:  5'- ---cCAGCCGcGAcCCCAGCGCCauccuggugggaGGGUu -3'
miRNA:   3'- cuuaGUCGGCaCU-GGGUCGCGG------------CCCG- -5'
23160 5' -59.5 NC_005178.1 + 12639 0.68 0.301097
Target:  5'- ----aGGCCGUGcuguacgGCUCGGCGgCCGGcGCg -3'
miRNA:   3'- cuuagUCGGCAC-------UGGGUCGC-GGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 23390 0.68 0.27993
Target:  5'- cGAuUCAGaCgGUcACCCAGCaCUGGGCa -3'
miRNA:   3'- -CUuAGUC-GgCAcUGGGUCGcGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 11757 0.69 0.227683
Target:  5'- ---aCGGCCGUGGCCCgAGCcauggggguuccGCCGcaGGCc -3'
miRNA:   3'- cuuaGUCGGCACUGGG-UCG------------CGGC--CCG- -5'
23160 5' -59.5 NC_005178.1 + 23283 0.66 0.366653
Target:  5'- cGAUCuGGCCacccuUGACgaaCAGCGCCaGGGCu -3'
miRNA:   3'- cUUAG-UCGGc----ACUGg--GUCGCGG-CCCG- -5'
23160 5' -59.5 NC_005178.1 + 32443 0.69 0.246239
Target:  5'- --uUCAGCCGUGGCgCGaucCGCUGGaGCu -3'
miRNA:   3'- cuuAGUCGGCACUGgGUc--GCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 5269 0.66 0.375398
Target:  5'- cAGUUGGCCGaGGCCgccaccguuCAGgGCCGGcGCg -3'
miRNA:   3'- cUUAGUCGGCaCUGG---------GUCgCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 6219 0.66 0.375398
Target:  5'- ----gAGCCGUGGgUuCAGuCGUCGGGCc -3'
miRNA:   3'- cuuagUCGGCACUgG-GUC-GCGGCCCG- -5'
23160 5' -59.5 NC_005178.1 + 16280 0.66 0.375398
Target:  5'- --cUCGGCCGagccguucaUGGCCaugauGCGCUGGuGCg -3'
miRNA:   3'- cuuAGUCGGC---------ACUGGgu---CGCGGCC-CG- -5'
23160 5' -59.5 NC_005178.1 + 33927 0.66 0.384283
Target:  5'- ---gCGGCCG-GugCCGGCuuuCCGGGg -3'
miRNA:   3'- cuuaGUCGGCaCugGGUCGc--GGCCCg -5'
23160 5' -59.5 NC_005178.1 + 17617 0.68 0.265352
Target:  5'- -cGUC-GCCGUGGucugacggucgagUCCAGCGCCGG-Ca -3'
miRNA:   3'- cuUAGuCGGCACU-------------GGGUCGCGGCCcG- -5'
23160 5' -59.5 NC_005178.1 + 10319 0.68 0.27291
Target:  5'- ---aUAGCCGagGGCCgGGCGCggagGGGCg -3'
miRNA:   3'- cuuaGUCGGCa-CUGGgUCGCGg---CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.