miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23162 5' -59.5 NC_005178.1 + 11860 0.66 0.384851
Target:  5'- gGCaGCAgcCCUa--CAGCGCCGAGCa -3'
miRNA:   3'- gCGgCGUa-GGAgugGUCGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 32917 0.66 0.384851
Target:  5'- aGCgGCGUggUCGCCGGCauGCCGAugGCUg -3'
miRNA:   3'- gCGgCGUAggAGUGGUCG--UGGCU--CGA- -5'
23162 5' -59.5 NC_005178.1 + 5703 0.66 0.375927
Target:  5'- aCGuuGCGaaUCCUCGguCCAGCgACCccgGAGCa -3'
miRNA:   3'- -GCggCGU--AGGAGU--GGUCG-UGG---CUCGa -5'
23162 5' -59.5 NC_005178.1 + 36288 0.66 0.375927
Target:  5'- uGCCGCuucggguuGUCCUCGucaauCCAGCguucggGCCaGAGCUu -3'
miRNA:   3'- gCGGCG--------UAGGAGU-----GGUCG------UGG-CUCGA- -5'
23162 5' -59.5 NC_005178.1 + 31296 0.66 0.367143
Target:  5'- aGCCGUGa---C-CCAGCGCCGGGCUa -3'
miRNA:   3'- gCGGCGUaggaGuGGUCGUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 11087 0.66 0.367143
Target:  5'- -cCCGCAUCCaccucggcCGgCAGCGCCGcGCUg -3'
miRNA:   3'- gcGGCGUAGGa-------GUgGUCGUGGCuCGA- -5'
23162 5' -59.5 NC_005178.1 + 20756 0.66 0.367143
Target:  5'- gGCCgGCAggCUgGCCAGCACCuGGUc -3'
miRNA:   3'- gCGG-CGUagGAgUGGUCGUGGcUCGa -5'
23162 5' -59.5 NC_005178.1 + 30605 0.66 0.364536
Target:  5'- uGCCGauugCCUCGCCGgcuuucgucuggcuGCugCGGGCc -3'
miRNA:   3'- gCGGCgua-GGAGUGGU--------------CGugGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 20572 0.66 0.361941
Target:  5'- gGUCGCGgcgcugaccucucgCCUCAaCGGCGgCGAGCUg -3'
miRNA:   3'- gCGGCGUa-------------GGAGUgGUCGUgGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 5740 0.66 0.361941
Target:  5'- uCGCCGCAUcgguggcggCCUCgggcacgaccgugucGcCCAGCACCGuucAGCg -3'
miRNA:   3'- -GCGGCGUA---------GGAG---------------U-GGUCGUGGC---UCGa -5'
23162 5' -59.5 NC_005178.1 + 9039 0.66 0.358502
Target:  5'- gCGCCGCccAUCCUCGuugguugauguCCAGCAgC-AGCg -3'
miRNA:   3'- -GCGGCG--UAGGAGU-----------GGUCGUgGcUCGa -5'
23162 5' -59.5 NC_005178.1 + 32884 0.66 0.350004
Target:  5'- aCGCCGCAgag-CAUCAGCGgCUGGGUg -3'
miRNA:   3'- -GCGGCGUaggaGUGGUCGU-GGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 16854 0.67 0.344975
Target:  5'- gCGCCGC-UCCUgGaugugaUCAGCcgcggagguagcgagGCCGAGCUg -3'
miRNA:   3'- -GCGGCGuAGGAgU------GGUCG---------------UGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 31145 0.67 0.333442
Target:  5'- uCGCgGCGcgCCUCGCCGcGacaAUCGAGCg -3'
miRNA:   3'- -GCGgCGUa-GGAGUGGU-Cg--UGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 20631 0.67 0.320611
Target:  5'- gCGCUGuCGUCCauauccgggaaugccUCgGCCagGGCGCCGAGCa -3'
miRNA:   3'- -GCGGC-GUAGG---------------AG-UGG--UCGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 3622 0.67 0.317461
Target:  5'- aCGCCcCGgaaagCCggCACCAGgcCGCCGAGCa -3'
miRNA:   3'- -GCGGcGUa----GGa-GUGGUC--GUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 30460 0.67 0.305097
Target:  5'- uCGCUGCAcUcgaccgaggucaccgCCUCGcCCAGgGCCGGGCa -3'
miRNA:   3'- -GCGGCGU-A---------------GGAGU-GGUCgUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 28175 0.67 0.302064
Target:  5'- gGCUGUAUCCgccucgGCCGGCGCCcuGGCg -3'
miRNA:   3'- gCGGCGUAGGag----UGGUCGUGGc-UCGa -5'
23162 5' -59.5 NC_005178.1 + 2959 0.68 0.294584
Target:  5'- gGcCCGCgAUCCUCGCgGccGC-CCGAGCg -3'
miRNA:   3'- gC-GGCG-UAGGAGUGgU--CGuGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 25643 0.68 0.287249
Target:  5'- cCGCCGaGUUCg-ACCGGCagcagGCCGAGCUg -3'
miRNA:   3'- -GCGGCgUAGGagUGGUCG-----UGGCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.