Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 6718 | 0.7 | 0.341594 |
|
Target: 5'- cUGCUGaGCcaggAGGugCCGccaugCGCCGAGCa -3' miRNA: 3'- -ACGACaUG----UUCugGGCca---GCGGCUCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 17321 | 0.7 | 0.341594 |
|
Target: 5'- cGCcGgacgGCGGGGCCgaGGUCGCCcAGCu -3' miRNA: 3'- aCGaCa---UGUUCUGGg-CCAGCGGcUCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 10452 | 0.69 | 0.376392 |
|
Target: 5'- cGCUGguacggugGCGcGAUCUGGagaUCGUCGAGCg -3' miRNA: 3'- aCGACa-------UGUuCUGGGCC---AGCGGCUCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 20444 | 0.69 | 0.385458 |
|
Target: 5'- gGcCUGgccCAGGACgCGGaCGUCGAGCa -3' miRNA: 3'- aC-GACau-GUUCUGgGCCaGCGGCUCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 12669 | 0.69 | 0.404015 |
|
Target: 5'- cGCUG-GCGGGugGCCUGGUUGCCu-GCg -3' miRNA: 3'- aCGACaUGUUC--UGGGCCAGCGGcuCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 34990 | 0.68 | 0.423128 |
|
Target: 5'- cGCUGgcCGAGGCgCCGaccagccuGUCGCaGAGCu -3' miRNA: 3'- aCGACauGUUCUG-GGC--------CAGCGgCUCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 7777 | 0.68 | 0.452786 |
|
Target: 5'- aGUccugGUGCGAGGCCaaccgUGCCGAGCu -3' miRNA: 3'- aCGa---CAUGUUCUGGgcca-GCGGCUCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 12644 | 0.67 | 0.483542 |
|
Target: 5'- gUGCUGUAC--GGCUCGG-CGgCCG-GCg -3' miRNA: 3'- -ACGACAUGuuCUGGGCCaGC-GGCuCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 19107 | 0.67 | 0.504593 |
|
Target: 5'- gGCUGgacgAUGAGGCUCGcucCGCCGaAGCg -3' miRNA: 3'- aCGACa---UGUUCUGGGCca-GCGGC-UCG- -5' |
|||||||
| 23164 | 3' | -56.1 | NC_005178.1 | + | 32617 | 1.12 | 0.0003 |
|
Target: 5'- cUGCUGUACAAGACCCGGUCGCCGAGCg -3' miRNA: 3'- -ACGACAUGUUCUGGGCCAGCGGCUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home