miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 19740 0.66 0.333272
Target:  5'- aACCGCCGCGCucgaCCGUcGCC---ACCa -3'
miRNA:   3'- cUGGCGGCGCG----GGCAuCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 17606 0.72 0.119162
Target:  5'- cGGCCGCUGUGCgucgCCGUGGUCUGAcggucgaguccagcGCCg -3'
miRNA:   3'- -CUGGCGGCGCG----GGCAUCGGACU--------------UGGg -5'
23166 5' -60.9 NC_005178.1 + 2992 0.66 0.333272
Target:  5'- uGGCUGCCgaGCGUgCGcAGCCUGGAgCg -3'
miRNA:   3'- -CUGGCGG--CGCGgGCaUCGGACUUgGg -5'
23166 5' -60.9 NC_005178.1 + 18094 0.66 0.333272
Target:  5'- uGCCGCaGCGCCU--GGCCc-AGCCCg -3'
miRNA:   3'- cUGGCGgCGCGGGcaUCGGacUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 7035 0.66 0.30994
Target:  5'- cGAgCGUCGUGUCC-UGGCCgcgcUGAGCCg -3'
miRNA:   3'- -CUgGCGGCGCGGGcAUCGG----ACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 8097 0.66 0.30994
Target:  5'- -uCUGCUGgGCCUcUGGCCUG-AUCCa -3'
miRNA:   3'- cuGGCGGCgCGGGcAUCGGACuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 33901 0.67 0.303188
Target:  5'- -cCUGCCGCGCCUGgcggcgaugcucggcGGCC-GGugCCg -3'
miRNA:   3'- cuGGCGGCGCGGGCa--------------UCGGaCUugGG- -5'
23166 5' -60.9 NC_005178.1 + 3894 0.72 0.13381
Target:  5'- cGGCCGCCGcCGCCacaugacccccaaCGaAGCCUGGGCgCu -3'
miRNA:   3'- -CUGGCGGC-GCGG-------------GCaUCGGACUUGgG- -5'
23166 5' -60.9 NC_005178.1 + 16520 0.71 0.158048
Target:  5'- cGCaCGCCGCGCCCcccGCCUGGucuucgACCUc -3'
miRNA:   3'- cUG-GCGGCGCGGGcauCGGACU------UGGG- -5'
23166 5' -60.9 NC_005178.1 + 10507 0.7 0.17603
Target:  5'- uGACgGgCaaacCGCCCGUAGCCUGcucagcgaucuAGCCCg -3'
miRNA:   3'- -CUGgCgGc---GCGGGCAUCGGAC-----------UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 23454 0.7 0.19069
Target:  5'- cGACgGCCaggGCGCCCGgcgcgaAGCCg--GCCCg -3'
miRNA:   3'- -CUGgCGG---CGCGGGCa-----UCGGacuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 11157 0.69 0.20587
Target:  5'- uGGCCGCCGCccugggcuuccugGuCCUGUGGCCccGAACUa -3'
miRNA:   3'- -CUGGCGGCG-------------C-GGGCAUCGGa-CUUGGg -5'
23166 5' -60.9 NC_005178.1 + 9521 0.69 0.211896
Target:  5'- aGACCGCCaGCGCCgCcUGGCgCggGAACgCCa -3'
miRNA:   3'- -CUGGCGG-CGCGG-GcAUCG-Ga-CUUG-GG- -5'
23166 5' -60.9 NC_005178.1 + 24993 0.68 0.241224
Target:  5'- cGCCGCCugugGCGCCCGaUAGUagUGGcucaaGCCCu -3'
miRNA:   3'- cUGGCGG----CGCGGGC-AUCGg-ACU-----UGGG- -5'
23166 5' -60.9 NC_005178.1 + 18673 0.67 0.27386
Target:  5'- -cCCGgCGCGCCCGUA-CCU---CCCg -3'
miRNA:   3'- cuGGCgGCGCGGGCAUcGGAcuuGGG- -5'
23166 5' -60.9 NC_005178.1 + 10654 0.67 0.280797
Target:  5'- cGGCCGgcgucuCCGCGCCgacccUGUcucAGCCguUGAACCCc -3'
miRNA:   3'- -CUGGC------GGCGCGG-----GCA---UCGG--ACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 27723 0.67 0.280797
Target:  5'- cGACCGauuCGCGCagcagcGCCUGGACCUg -3'
miRNA:   3'- -CUGGCg--GCGCGggcau-CGGACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 20254 0.67 0.287873
Target:  5'- aGCgGCCGCGaCCUuUGGCCUcuacAACCCc -3'
miRNA:   3'- cUGgCGGCGC-GGGcAUCGGAc---UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 1947 0.67 0.295089
Target:  5'- aACCGuCCG-GCCCGUgAGCC-GAAUCUu -3'
miRNA:   3'- cUGGC-GGCgCGGGCA-UCGGaCUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 6734 0.67 0.302444
Target:  5'- uGCCGCCauGCGCCg--AGCaCUGAuCCCc -3'
miRNA:   3'- cUGGCGG--CGCGGgcaUCG-GACUuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.