Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23167 | 5' | -60.7 | NC_005178.1 | + | 34817 | 1.1 | 0.000149 |
Target: 5'- aUCUGCCGGCGACAACCGGCGUGGCGCc -3' miRNA: 3'- -AGACGGCCGCUGUUGGCCGCACCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 24775 | 0.79 | 0.041071 |
Target: 5'- aCUGCCGGuCGAgGACguaGGCGcGGCGCa -3' miRNA: 3'- aGACGGCC-GCUgUUGg--CCGCaCCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 8987 | 0.77 | 0.053239 |
Target: 5'- -aUGCCGGCGACGcccCCGGU--GGCGCg -3' miRNA: 3'- agACGGCCGCUGUu--GGCCGcaCCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 1886 | 0.76 | 0.066944 |
Target: 5'- aCUGCUGGaUGugAgGCCGGCGUaGGUGCg -3' miRNA: 3'- aGACGGCC-GCugU-UGGCCGCA-CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 26178 | 0.75 | 0.075017 |
Target: 5'- aUCgGCgCGGCGGUGGCCgcugcgGGCGUGGCGCu -3' miRNA: 3'- -AGaCG-GCCGCUGUUGG------CCGCACCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 33589 | 0.75 | 0.081676 |
Target: 5'- -gUGCUGGUcGCGACCGGCGacGCGCu -3' miRNA: 3'- agACGGCCGcUGUUGGCCGCacCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 31768 | 0.75 | 0.083781 |
Target: 5'- -aUGCCGGCGACGACCuacagggGGCGgccaGUGCu -3' miRNA: 3'- agACGGCCGCUGUUGG-------CCGCac--CGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 12050 | 0.74 | 0.091436 |
Target: 5'- aUCcGCUGGUGGCuGCCcGCGUGGCGg -3' miRNA: 3'- -AGaCGGCCGCUGuUGGcCGCACCGCg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 23445 | 0.74 | 0.099472 |
Target: 5'- --cGCCcagGGCGACGGCCagGGCGcccGGCGCg -3' miRNA: 3'- agaCGG---CCGCUGUUGG--CCGCa--CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 2137 | 0.73 | 0.105196 |
Target: 5'- gCUGUCGGUGGCGGCCaGCGccGGgGCc -3' miRNA: 3'- aGACGGCCGCUGUUGGcCGCa-CCgCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 12914 | 0.73 | 0.108172 |
Target: 5'- gCUgGCCGGUgGugGGCUGGaggaCGUGGCGCg -3' miRNA: 3'- aGA-CGGCCG-CugUUGGCC----GCACCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 12646 | 0.73 | 0.111227 |
Target: 5'- gCUGUaCGGCucGGCGGCCGGCGcgcUGGCGg -3' miRNA: 3'- aGACG-GCCG--CUGUUGGCCGC---ACCGCg -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 2994 | 0.73 | 0.116931 |
Target: 5'- gCUGCCGaGCGugcgcagccuggaGCGcuuccuggaccagGCCGaGCGUGGCGCc -3' miRNA: 3'- aGACGGC-CGC-------------UGU-------------UGGC-CGCACCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 33667 | 0.72 | 0.129879 |
Target: 5'- -gUGgCGGCGGCGGCCGGUGUucgggucaacgauGCGCg -3' miRNA: 3'- agACgGCCGCUGUUGGCCGCAc------------CGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 33910 | 0.72 | 0.142573 |
Target: 5'- cCUGgCGGCGAUGcUCGGCGgccGGUGCc -3' miRNA: 3'- aGACgGCCGCUGUuGGCCGCa--CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 4469 | 0.71 | 0.153452 |
Target: 5'- cCUGCCGaccgcucccgcccaGCG-CuACCGGCaGUGGUGCg -3' miRNA: 3'- aGACGGC--------------CGCuGuUGGCCG-CACCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 28948 | 0.71 | 0.154706 |
Target: 5'- --gGCCGGaGACuuCCGGCGagcgcgUGGUGCa -3' miRNA: 3'- agaCGGCCgCUGuuGGCCGC------ACCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 14624 | 0.71 | 0.167767 |
Target: 5'- --gGCCaGCGGCAGCUGGUagcgGGCGUg -3' miRNA: 3'- agaCGGcCGCUGUUGGCCGca--CCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 23698 | 0.71 | 0.172336 |
Target: 5'- -aUGCCGGCa--AGCCGGU--GGCGCa -3' miRNA: 3'- agACGGCCGcugUUGGCCGcaCCGCG- -5' |
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23167 | 5' | -60.7 | NC_005178.1 | + | 30114 | 0.7 | 0.189714 |
Target: 5'- gCUGCCGGUcaguuccguccaguGAUGAUCGGCucccucaacaagcGUGGCGUc -3' miRNA: 3'- aGACGGCCG--------------CUGUUGGCCG-------------CACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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