miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23167 5' -60.7 NC_005178.1 + 351 0.67 0.322168
Target:  5'- -gUGCCGGUaGCGA-UGGCGUcaaacucggccuccaGGCGCa -3'
miRNA:   3'- agACGGCCGcUGUUgGCCGCA---------------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 1886 0.76 0.066944
Target:  5'- aCUGCUGGaUGugAgGCCGGCGUaGGUGCg -3'
miRNA:   3'- aGACGGCC-GCugU-UGGCCGCA-CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 2137 0.73 0.105196
Target:  5'- gCUGUCGGUGGCGGCCaGCGccGGgGCc -3'
miRNA:   3'- aGACGGCCGCUGUUGGcCGCa-CCgCG- -5'
23167 5' -60.7 NC_005178.1 + 2378 0.67 0.310648
Target:  5'- aCUGCggccUGGcCGACAgugacguccuccaGCCGGC-UGGCGUu -3'
miRNA:   3'- aGACG----GCC-GCUGU-------------UGGCCGcACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 2449 0.66 0.351102
Target:  5'- --cGCCaGCGGCAGCuCGGC--GGCGa -3'
miRNA:   3'- agaCGGcCGCUGUUG-GCCGcaCCGCg -5'
23167 5' -60.7 NC_005178.1 + 2994 0.73 0.116931
Target:  5'- gCUGCCGaGCGugcgcagccuggaGCGcuuccuggaccagGCCGaGCGUGGCGCc -3'
miRNA:   3'- aGACGGC-CGC-------------UGU-------------UGGC-CGCACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 4469 0.71 0.153452
Target:  5'- cCUGCCGaccgcucccgcccaGCG-CuACCGGCaGUGGUGCg -3'
miRNA:   3'- aGACGGC--------------CGCuGuUGGCCG-CACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 5031 0.66 0.342883
Target:  5'- gUUGUCGGUGAUGccgcCCGGCacGGUGCg -3'
miRNA:   3'- aGACGGCCGCUGUu---GGCCGcaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 5366 0.67 0.319065
Target:  5'- -gUGUCGGCGucCAGCuCGGUGcUGGUGa -3'
miRNA:   3'- agACGGCCGCu-GUUG-GCCGC-ACCGCg -5'
23167 5' -60.7 NC_005178.1 + 7627 0.66 0.334003
Target:  5'- aUUGCCGGCGAgCugccauugauuggAACCGGCGUugaacgaccaguGGcCGUc -3'
miRNA:   3'- aGACGGCCGCU-G-------------UUGGCCGCA------------CC-GCG- -5'
23167 5' -60.7 NC_005178.1 + 8753 0.68 0.261708
Target:  5'- cUUGCCgugGGCGACuugGCCaGCGUGcGgGCg -3'
miRNA:   3'- aGACGG---CCGCUGu--UGGcCGCAC-CgCG- -5'
23167 5' -60.7 NC_005178.1 + 8987 0.77 0.053239
Target:  5'- -aUGCCGGCGACGcccCCGGU--GGCGCg -3'
miRNA:   3'- agACGGCCGCUGUu--GGCCGcaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 9289 0.66 0.351102
Target:  5'- aCUGacaccauUGGCGGCGGCCaGCGaGGCGg -3'
miRNA:   3'- aGACg------GCCGCUGUUGGcCGCaCCGCg -5'
23167 5' -60.7 NC_005178.1 + 9338 0.67 0.303888
Target:  5'- --cGCCuGCGACGaguGCCuGGCacGGCGCg -3'
miRNA:   3'- agaCGGcCGCUGU---UGG-CCGcaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 9450 0.7 0.191737
Target:  5'- --aGCCGG-GACGgucuGCCGGaCGUGGUGg -3'
miRNA:   3'- agaCGGCCgCUGU----UGGCC-GCACCGCg -5'
23167 5' -60.7 NC_005178.1 + 9662 0.68 0.267718
Target:  5'- --gGCCGGUGGCuucgccgAGCCGGCcgaGGCGg -3'
miRNA:   3'- agaCGGCCGCUG-------UUGGCCGca-CCGCg -5'
23167 5' -60.7 NC_005178.1 + 10127 0.66 0.35946
Target:  5'- --gGCUGGaCGACAgccagcucuACCGGCugaugcaGGCGCu -3'
miRNA:   3'- agaCGGCC-GCUGU---------UGGCCGca-----CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 10296 0.69 0.2309
Target:  5'- --aGCuCGGCGGCAcgucCUGGCGgauagccgagggccgGGCGCg -3'
miRNA:   3'- agaCG-GCCGCUGUu---GGCCGCa--------------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 10636 0.66 0.342883
Target:  5'- --aGCCGG-GGCGcaacgccccgGCCGGCGUcuccGCGCc -3'
miRNA:   3'- agaCGGCCgCUGU----------UGGCCGCAc---CGCG- -5'
23167 5' -60.7 NC_005178.1 + 11388 0.66 0.351102
Target:  5'- gUCUGCCcgccuGGUGGCuGAUCGGUGcGGCccuGCg -3'
miRNA:   3'- -AGACGG-----CCGCUG-UUGGCCGCaCCG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.