miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23167 5' -60.7 NC_005178.1 + 8753 0.68 0.261708
Target:  5'- cUUGCCgugGGCGACuugGCCaGCGUGcGgGCg -3'
miRNA:   3'- aGACGG---CCGCUGu--UGGcCGCAC-CgCG- -5'
23167 5' -60.7 NC_005178.1 + 22164 0.7 0.190218
Target:  5'- gCUGCCGGUuacggcuucuGGCAGCUGGCcuauggcuccaccgGcacUGGCGCa -3'
miRNA:   3'- aGACGGCCG----------CUGUUGGCCG--------------C---ACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 9450 0.7 0.191737
Target:  5'- --aGCCGG-GACGgucuGCCGGaCGUGGUGg -3'
miRNA:   3'- agaCGGCCgCUGU----UGGCC-GCACCGCg -5'
23167 5' -60.7 NC_005178.1 + 21237 0.69 0.21866
Target:  5'- --gGCCGGCcGCAucAUCGGCGUcgaaccggacGGCGUg -3'
miRNA:   3'- agaCGGCCGcUGU--UGGCCGCA----------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 28196 0.69 0.226757
Target:  5'- --cGCCcuGGCGACuGCUGGCGgcacgcuccugagcGGCGCc -3'
miRNA:   3'- agaCGG--CCGCUGuUGGCCGCa-------------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 37081 0.69 0.230304
Target:  5'- aCUcGCUGGCGuccCggUCGGCGaccUGGCGUu -3'
miRNA:   3'- aGA-CGGCCGCu--GuuGGCCGC---ACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 10296 0.69 0.2309
Target:  5'- --aGCuCGGCGGCAcgucCUGGCGgauagccgagggccgGGCGCg -3'
miRNA:   3'- agaCG-GCCGCUGUu---GGCCGCa--------------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 28308 0.68 0.248746
Target:  5'- gCUGCCGG-GGCcGCUGGaGUGGCu- -3'
miRNA:   3'- aGACGGCCgCUGuUGGCCgCACCGcg -5'
23167 5' -60.7 NC_005178.1 + 21787 0.68 0.25516
Target:  5'- --aGCCaGGCGGCGGCgaaGGCagguuaUGGCGCu -3'
miRNA:   3'- agaCGG-CCGCUGUUGg--CCGc-----ACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 30114 0.7 0.189714
Target:  5'- gCUGCCGGUcaguuccguccaguGAUGAUCGGCucccucaacaagcGUGGCGUc -3'
miRNA:   3'- aGACGGCCG--------------CUGUUGGCCG-------------CACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 23698 0.71 0.172336
Target:  5'- -aUGCCGGCa--AGCCGGU--GGCGCa -3'
miRNA:   3'- agACGGCCGcugUUGGCCGcaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 4469 0.71 0.153452
Target:  5'- cCUGCCGaccgcucccgcccaGCG-CuACCGGCaGUGGUGCg -3'
miRNA:   3'- aGACGGC--------------CGCuGuUGGCCG-CACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 26178 0.75 0.075017
Target:  5'- aUCgGCgCGGCGGUGGCCgcugcgGGCGUGGCGCu -3'
miRNA:   3'- -AGaCG-GCCGCUGUUGG------CCGCACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 33589 0.75 0.081676
Target:  5'- -gUGCUGGUcGCGACCGGCGacGCGCu -3'
miRNA:   3'- agACGGCCGcUGUUGGCCGCacCGCG- -5'
23167 5' -60.7 NC_005178.1 + 31768 0.75 0.083781
Target:  5'- -aUGCCGGCGACGACCuacagggGGCGgccaGUGCu -3'
miRNA:   3'- agACGGCCGCUGUUGG-------CCGCac--CGCG- -5'
23167 5' -60.7 NC_005178.1 + 23445 0.74 0.099472
Target:  5'- --cGCCcagGGCGACGGCCagGGCGcccGGCGCg -3'
miRNA:   3'- agaCGG---CCGCUGUUGG--CCGCa--CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 12914 0.73 0.108172
Target:  5'- gCUgGCCGGUgGugGGCUGGaggaCGUGGCGCg -3'
miRNA:   3'- aGA-CGGCCG-CugUUGGCC----GCACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 12646 0.73 0.111227
Target:  5'- gCUGUaCGGCucGGCGGCCGGCGcgcUGGCGg -3'
miRNA:   3'- aGACG-GCCG--CUGUUGGCCGC---ACCGCg -5'
23167 5' -60.7 NC_005178.1 + 2994 0.73 0.116931
Target:  5'- gCUGCCGaGCGugcgcagccuggaGCGcuuccuggaccagGCCGaGCGUGGCGCc -3'
miRNA:   3'- aGACGGC-CGC-------------UGU-------------UGGC-CGCACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 33910 0.72 0.142573
Target:  5'- cCUGgCGGCGAUGcUCGGCGgccGGUGCc -3'
miRNA:   3'- aGACgGCCGCUGUuGGCCGCa--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.