miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23168 3' -56 NC_005178.1 + 28531 0.66 0.57074
Target:  5'- aGGUCGAa---GCCGGCaacGGCGCGGagUCGg -3'
miRNA:   3'- -UCAGUUgaugCGGUCG---CCGUGCC--AGU- -5'
23168 3' -56 NC_005178.1 + 8988 0.66 0.559595
Target:  5'- uGcCGGCgACGCCcccGGUGGCGCGG-CGg -3'
miRNA:   3'- uCaGUUGaUGCGG---UCGCCGUGCCaGU- -5'
23168 3' -56 NC_005178.1 + 29058 0.66 0.548512
Target:  5'- --aCAACcuuCGCCugaugGGCGGCACGGcguUCAa -3'
miRNA:   3'- ucaGUUGau-GCGG-----UCGCCGUGCC---AGU- -5'
23168 3' -56 NC_005178.1 + 32560 0.66 0.548512
Target:  5'- -aUCAGCUcgACcugGCCAGCGGCGaccaggUGGUCc -3'
miRNA:   3'- ucAGUUGA--UG---CGGUCGCCGU------GCCAGu -5'
23168 3' -56 NC_005178.1 + 34523 0.66 0.548512
Target:  5'- cGGUC-GCUGCGUCgcaggGGCGGCGCucGUCu -3'
miRNA:   3'- -UCAGuUGAUGCGG-----UCGCCGUGc-CAGu -5'
23168 3' -56 NC_005178.1 + 12191 0.66 0.537499
Target:  5'- cGGaCAGCUcccgGCCAGCcuggcuGGCAUGGUCGc -3'
miRNA:   3'- -UCaGUUGAug--CGGUCG------CCGUGCCAGU- -5'
23168 3' -56 NC_005178.1 + 2506 0.66 0.537499
Target:  5'- -aUCAACgaacGCGCCAgagcugccgacGCGGU-CGGUCAg -3'
miRNA:   3'- ucAGUUGa---UGCGGU-----------CGCCGuGCCAGU- -5'
23168 3' -56 NC_005178.1 + 34072 0.66 0.537499
Target:  5'- cAGuUCAuCUG-GCUAGCGG-ACGGUCAg -3'
miRNA:   3'- -UC-AGUuGAUgCGGUCGCCgUGCCAGU- -5'
23168 3' -56 NC_005178.1 + 32898 0.66 0.526562
Target:  5'- cAG-CGGCUGgGugaucuCCAGCGGCGUGGUCGc -3'
miRNA:   3'- -UCaGUUGAUgC------GGUCGCCGUGCCAGU- -5'
23168 3' -56 NC_005178.1 + 25913 0.66 0.51571
Target:  5'- cAG-CAGCUuuGCCAG-GGCGCGGa-- -3'
miRNA:   3'- -UCaGUUGAugCGGUCgCCGUGCCagu -5'
23168 3' -56 NC_005178.1 + 35146 0.67 0.50495
Target:  5'- cGUUGACgaACGCCAGcCGGCugGaggacGUCAc -3'
miRNA:   3'- uCAGUUGa-UGCGGUC-GCCGugC-----CAGU- -5'
23168 3' -56 NC_005178.1 + 33817 0.67 0.494287
Target:  5'- cGUCAGCUugaaggugGCCAGCuuGGCcugGCGGUCc -3'
miRNA:   3'- uCAGUUGAug------CGGUCG--CCG---UGCCAGu -5'
23168 3' -56 NC_005178.1 + 12718 0.67 0.494287
Target:  5'- cGUCAGC-ACGuCCAGCGcaAUGGUCGc -3'
miRNA:   3'- uCAGUUGaUGC-GGUCGCcgUGCCAGU- -5'
23168 3' -56 NC_005178.1 + 14614 0.67 0.483729
Target:  5'- cAGgCAcCUGgGCCAGCGGCAgcUGGUa- -3'
miRNA:   3'- -UCaGUuGAUgCGGUCGCCGU--GCCAgu -5'
23168 3' -56 NC_005178.1 + 36015 0.67 0.473279
Target:  5'- cAGgcgCGAC-AUGCgGGCGGCgaccucguaACGGUCAa -3'
miRNA:   3'- -UCa--GUUGaUGCGgUCGCCG---------UGCCAGU- -5'
23168 3' -56 NC_005178.1 + 17305 0.67 0.472241
Target:  5'- cGUCAGauaguggUUGCGCCGGaCGGCGgGGcCGa -3'
miRNA:   3'- uCAGUU-------GAUGCGGUC-GCCGUgCCaGU- -5'
23168 3' -56 NC_005178.1 + 13547 0.68 0.413151
Target:  5'- --cCAGCU-CGCCuauGCGGCG-GGUCAg -3'
miRNA:   3'- ucaGUUGAuGCGGu--CGCCGUgCCAGU- -5'
23168 3' -56 NC_005178.1 + 35112 0.69 0.384906
Target:  5'- ---gAGCUGcCGCUGGCGGC-CGGUCc -3'
miRNA:   3'- ucagUUGAU-GCGGUCGCCGuGCCAGu -5'
23168 3' -56 NC_005178.1 + 9701 0.69 0.366799
Target:  5'- aGGUCGGCguaguUGCGUugCAGCuGCugGGUCAu -3'
miRNA:   3'- -UCAGUUG-----AUGCG--GUCGcCGugCCAGU- -5'
23168 3' -56 NC_005178.1 + 5871 0.69 0.357968
Target:  5'- cGGUCAGCcGgGUCAGCguaGGCuguuCGGUCAg -3'
miRNA:   3'- -UCAGUUGaUgCGGUCG---CCGu---GCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.