Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23168 | 3' | -56 | NC_005178.1 | + | 33689 | 0.69 | 0.357968 |
Target: 5'- gGGUCAACgaUGCGCgGcaagcugcuguGCGGC-CGGUCGu -3' miRNA: 3'- -UCAGUUG--AUGCGgU-----------CGCCGuGCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 28019 | 0.7 | 0.340758 |
Target: 5'- cGUUGGCguucccGCGCCAgGCGGCgcugGCGGUCu -3' miRNA: 3'- uCAGUUGa-----UGCGGU-CGCCG----UGCCAGu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 3221 | 0.71 | 0.300392 |
Target: 5'- aGGUCGGCaACGUCAGCcGCGaGGUCGg -3' miRNA: 3'- -UCAGUUGaUGCGGUCGcCGUgCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 33660 | 0.71 | 0.285312 |
Target: 5'- gGGUCAugUgGCGgCGGCGGC-CGGUg- -3' miRNA: 3'- -UCAGUugA-UGCgGUCGCCGuGCCAgu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 19942 | 0.72 | 0.237235 |
Target: 5'- cGUCAgaccACggcgACGCCAGCGGcCGCcGUCAa -3' miRNA: 3'- uCAGU----UGa---UGCGGUCGCC-GUGcCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 8761 | 0.76 | 0.140068 |
Target: 5'- gGG-CGACUugGCCAGCGuGCgggcgGCGGUCu -3' miRNA: 3'- -UCaGUUGAugCGGUCGC-CG-----UGCCAGu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 20159 | 0.82 | 0.045776 |
Target: 5'- -uUCAGCUACGCCccGGaCGGCACGGUCc -3' miRNA: 3'- ucAGUUGAUGCGG--UC-GCCGUGCCAGu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 35227 | 1.08 | 0.000557 |
Target: 5'- cAGUCAACUACGCCAGCGGCACGGUCAc -3' miRNA: 3'- -UCAGUUGAUGCGGUCGCCGUGCCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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