miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23168 5' -59.5 NC_005178.1 + 27295 0.7 0.230255
Target:  5'- gCGUGGCcgGCagGCCGAUG-CGU-CCGGCc -3'
miRNA:   3'- -GCGCCGa-CG--CGGCUAUgGCAuGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 2146 0.7 0.236291
Target:  5'- gGCGGCcaGCGCCGggGCCaGUuggcccucGCUGGUg -3'
miRNA:   3'- gCGCCGa-CGCGGCuaUGG-CA--------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 24448 0.7 0.242459
Target:  5'- gGCGGC-GCGCCGGUcaucgucgaGCUGUACaaGGUc -3'
miRNA:   3'- gCGCCGaCGCGGCUA---------UGGCAUGg-CCG- -5'
23168 5' -59.5 NC_005178.1 + 11657 0.7 0.242459
Target:  5'- aCGuCGGUgaucUGCGCCGGcaacUGCCGcaugGCCuGGCg -3'
miRNA:   3'- -GC-GCCG----ACGCGGCU----AUGGCa---UGG-CCG- -5'
23168 5' -59.5 NC_005178.1 + 4758 0.7 0.242459
Target:  5'- uGCGGCaguagGUGUCGAUcaaGCCGgGCUGGUc -3'
miRNA:   3'- gCGCCGa----CGCGGCUA---UGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 9666 0.7 0.242459
Target:  5'- gGUGGCUuCGCCGAgccgGCCGaGgCGGUc -3'
miRNA:   3'- gCGCCGAcGCGGCUa---UGGCaUgGCCG- -5'
23168 5' -59.5 NC_005178.1 + 13472 0.69 0.24876
Target:  5'- gCGCcaGGUUGUccggGCCGAUGCUGUGCagGGUg -3'
miRNA:   3'- -GCG--CCGACG----CGGCUAUGGCAUGg-CCG- -5'
23168 5' -59.5 NC_005178.1 + 17996 0.69 0.24876
Target:  5'- uGCGGCUGC-CCagGGUGCCcagcuccagGCUGGCg -3'
miRNA:   3'- gCGCCGACGcGG--CUAUGGca-------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 28301 0.69 0.24876
Target:  5'- uGCGGgaGCuGCCGggGCCGcuggagugGCUGGUg -3'
miRNA:   3'- gCGCCgaCG-CGGCuaUGGCa-------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 16343 0.69 0.261768
Target:  5'- aGCGGguuucgGUGCCGu--CCGUGgCGGCg -3'
miRNA:   3'- gCGCCga----CGCGGCuauGGCAUgGCCG- -5'
23168 5' -59.5 NC_005178.1 + 29189 0.69 0.261768
Target:  5'- aGCuGUUGCGCgCGGUugCGUGCCa-- -3'
miRNA:   3'- gCGcCGACGCG-GCUAugGCAUGGccg -5'
23168 5' -59.5 NC_005178.1 + 7886 0.69 0.261768
Target:  5'- uGUGcGCgGCGCCGAUGCgGUcCUGGa -3'
miRNA:   3'- gCGC-CGaCGCGGCUAUGgCAuGGCCg -5'
23168 5' -59.5 NC_005178.1 + 25629 0.69 0.268477
Target:  5'- uGCGGCgaaagccacCGCCGAguUCG-ACCGGCa -3'
miRNA:   3'- gCGCCGac-------GCGGCUauGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 331 0.69 0.28231
Target:  5'- --aGGCUGUcagGuCCGGcGCUGUGCCGGUa -3'
miRNA:   3'- gcgCCGACG---C-GGCUaUGGCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 14090 0.68 0.289435
Target:  5'- gGcCGGCUucGCGCCGGgcgcccugGCCGUcGCCcugGGCg -3'
miRNA:   3'- gC-GCCGA--CGCGGCUa-------UGGCA-UGG---CCG- -5'
23168 5' -59.5 NC_005178.1 + 27562 0.68 0.289435
Target:  5'- uGCGGCacuuuugGCGUCGcccgGCCuUGCCGGUu -3'
miRNA:   3'- gCGCCGa------CGCGGCua--UGGcAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 20211 0.68 0.292325
Target:  5'- gCGCgGGCUGCcgaGCUGGgcgaccucggccccGCCGU-CCGGCg -3'
miRNA:   3'- -GCG-CCGACG---CGGCUa-------------UGGCAuGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 17313 0.68 0.296702
Target:  5'- aGUGGUUGCGCCGGacggcgggGCCGaggucgcccaGCuCGGCa -3'
miRNA:   3'- gCGCCGACGCGGCUa-------UGGCa---------UG-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 29496 0.68 0.296702
Target:  5'- cCGCugGGCUGCgGCCGAUAU---GCgGGCa -3'
miRNA:   3'- -GCG--CCGACG-CGGCUAUGgcaUGgCCG- -5'
23168 5' -59.5 NC_005178.1 + 18797 0.68 0.304109
Target:  5'- aGCGGCacauUGUGCCuAUugCGUAUUaGGCa -3'
miRNA:   3'- gCGCCG----ACGCGGcUAugGCAUGG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.