miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23168 5' -59.5 NC_005178.1 + 35261 1.1 0.00022
Target:  5'- gCGCGGCUGCGCCGAUACCGUACCGGCc -3'
miRNA:   3'- -GCGCCGACGCGGCUAUGGCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 12937 0.78 0.064753
Target:  5'- aCGUGGC-GCGCCaGGUGCUG-GCCGGCc -3'
miRNA:   3'- -GCGCCGaCGCGG-CUAUGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 18150 0.74 0.120582
Target:  5'- -uCGGCUgcGCGCCGuugGCUGaUGCCGGCu -3'
miRNA:   3'- gcGCCGA--CGCGGCua-UGGC-AUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 21044 0.74 0.120582
Target:  5'- gCGCGGCgUGCGUCGAgguUGCCGgAgCGGUu -3'
miRNA:   3'- -GCGCCG-ACGCGGCU---AUGGCaUgGCCG- -5'
23168 5' -59.5 NC_005178.1 + 33913 0.74 0.120582
Target:  5'- gGCGGCgaugcucgGCgGCCGGUGCCGgcuuuCCGGg -3'
miRNA:   3'- gCGCCGa-------CG-CGGCUAUGGCau---GGCCg -5'
23168 5' -59.5 NC_005178.1 + 8169 0.73 0.138068
Target:  5'- aGCaGCUGCGCUcguaggggcugcuGAUGCCccgGUGCCGGUc -3'
miRNA:   3'- gCGcCGACGCGG-------------CUAUGG---CAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 10351 0.73 0.146252
Target:  5'- gCGCcgGGCUGCGCUG--GCCGaGCUGGUg -3'
miRNA:   3'- -GCG--CCGACGCGGCuaUGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 2726 0.73 0.146252
Target:  5'- gGUGGCgGCGCCac-GCCGguugucGCCGGCa -3'
miRNA:   3'- gCGCCGaCGCGGcuaUGGCa-----UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 32917 0.72 0.158713
Target:  5'- aGCGGCgugGuCGCCGGcaUGCCGaugGCUGGUu -3'
miRNA:   3'- gCGCCGa--C-GCGGCU--AUGGCa--UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 9334 0.72 0.172124
Target:  5'- aGCGGCgGCGCCGcucaggAgCGUGCCGccaGCa -3'
miRNA:   3'- gCGCCGaCGCGGCua----UgGCAUGGC---CG- -5'
23168 5' -59.5 NC_005178.1 + 2273 0.72 0.176815
Target:  5'- -cCGGCcagaUGCuugGCCGGUACgGUAUCGGCg -3'
miRNA:   3'- gcGCCG----ACG---CGGCUAUGgCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 36699 0.71 0.183573
Target:  5'- aGCGGUUcugugggugcGCGCUGAaACCGgaucgcuccauuucaUGCCGGCg -3'
miRNA:   3'- gCGCCGA----------CGCGGCUaUGGC---------------AUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 33700 0.71 0.186538
Target:  5'- gCGCGGCaagcugcugUGCgGCCGGUcGuuGUACuCGGCa -3'
miRNA:   3'- -GCGCCG---------ACG-CGGCUA-UggCAUG-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 29159 0.71 0.196208
Target:  5'- gCGCuGCUGUggaaucaGCCcAUGCCGUACUGGUu -3'
miRNA:   3'- -GCGcCGACG-------CGGcUAUGGCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 18375 0.71 0.196729
Target:  5'- aCGCGGCUGUaaCCGAcacccUGCCGcugaUGCgCGGCa -3'
miRNA:   3'- -GCGCCGACGc-GGCU-----AUGGC----AUG-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 2303 0.71 0.196729
Target:  5'- nCGCaGCcGCGCgCGAgggugACCGUGCCgcuGGCg -3'
miRNA:   3'- -GCGcCGaCGCG-GCUa----UGGCAUGG---CCG- -5'
23168 5' -59.5 NC_005178.1 + 12963 0.71 0.207403
Target:  5'- uGCGGCcgaaGCGCCcaGGUcGCCGguauCCGGCu -3'
miRNA:   3'- gCGCCGa---CGCGG--CUA-UGGCau--GGCCG- -5'
23168 5' -59.5 NC_005178.1 + 9083 0.7 0.218574
Target:  5'- aGCccuGGCUGCaugGCgGAUGCCG-ACCGGa -3'
miRNA:   3'- gCG---CCGACG---CGgCUAUGGCaUGGCCg -5'
23168 5' -59.5 NC_005178.1 + 13229 0.7 0.22435
Target:  5'- -aCGGCUGgGUCGggGCCGgcgUCGGCa -3'
miRNA:   3'- gcGCCGACgCGGCuaUGGCau-GGCCG- -5'
23168 5' -59.5 NC_005178.1 + 27295 0.7 0.230255
Target:  5'- gCGUGGCcgGCagGCCGAUG-CGU-CCGGCc -3'
miRNA:   3'- -GCGCCGa-CG--CGGCUAUgGCAuGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.