miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23168 5' -59.5 NC_005178.1 + 331 0.69 0.28231
Target:  5'- --aGGCUGUcagGuCCGGcGCUGUGCCGGUa -3'
miRNA:   3'- gcgCCGACG---C-GGCUaUGGCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 2146 0.7 0.236291
Target:  5'- gGCGGCcaGCGCCGggGCCaGUuggcccucGCUGGUg -3'
miRNA:   3'- gCGCCGa-CGCGGCuaUGG-CA--------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 2273 0.72 0.176815
Target:  5'- -cCGGCcagaUGCuugGCCGGUACgGUAUCGGCg -3'
miRNA:   3'- gcGCCG----ACG---CGGCUAUGgCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 2303 0.71 0.196729
Target:  5'- nCGCaGCcGCGCgCGAgggugACCGUGCCgcuGGCg -3'
miRNA:   3'- -GCGcCGaCGCG-GCUa----UGGCAUGG---CCG- -5'
23168 5' -59.5 NC_005178.1 + 2726 0.73 0.146252
Target:  5'- gGUGGCgGCGCCac-GCCGguugucGCCGGCa -3'
miRNA:   3'- gCGCCGaCGCGGcuaUGGCa-----UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 2971 0.66 0.422479
Target:  5'- uCGCGGCcgcccgaGCGCgGAUGgC-UGCCGaGCg -3'
miRNA:   3'- -GCGCCGa------CGCGgCUAUgGcAUGGC-CG- -5'
23168 5' -59.5 NC_005178.1 + 4758 0.7 0.242459
Target:  5'- uGCGGCaguagGUGUCGAUcaaGCCGgGCUGGUc -3'
miRNA:   3'- gCGCCGa----CGCGGCUA---UGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 5111 0.68 0.311657
Target:  5'- aGCGGaucGCGCCacggcugaacuGAUacaGCCGcACCGGCu -3'
miRNA:   3'- gCGCCga-CGCGG-----------CUA---UGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 5252 0.67 0.349027
Target:  5'- uCGCGGUuaaccuggagcaguUG-GCCGAggccgccACCGUucaggGCCGGCg -3'
miRNA:   3'- -GCGCCG--------------ACgCGGCUa------UGGCA-----UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 5614 0.66 0.413145
Target:  5'- cCGCucGGCUcgGCccauGCCGAUccagcgaugGCCGaugACCGGCa -3'
miRNA:   3'- -GCG--CCGA--CG----CGGCUA---------UGGCa--UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 6041 0.66 0.431938
Target:  5'- gGCGGCUGaaGCCGugaugaagACgGUGCCGa- -3'
miRNA:   3'- gCGCCGACg-CGGCua------UGgCAUGGCcg -5'
23168 5' -59.5 NC_005178.1 + 7886 0.69 0.261768
Target:  5'- uGUGcGCgGCGCCGAUGCgGUcCUGGa -3'
miRNA:   3'- gCGC-CGaCGCGGCUAUGgCAuGGCCg -5'
23168 5' -59.5 NC_005178.1 + 8169 0.73 0.138068
Target:  5'- aGCaGCUGCGCUcguaggggcugcuGAUGCCccgGUGCCGGUc -3'
miRNA:   3'- gCGcCGACGCGG-------------CUAUGG---CAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 8585 0.67 0.352352
Target:  5'- aGgGGCgcgcagggucaccugGCGCaCGGcgaugGCCGUGCCGGa -3'
miRNA:   3'- gCgCCGa--------------CGCG-GCUa----UGGCAUGGCCg -5'
23168 5' -59.5 NC_005178.1 + 9083 0.7 0.218574
Target:  5'- aGCccuGGCUGCaugGCgGAUGCCG-ACCGGa -3'
miRNA:   3'- gCG---CCGACG---CGgCUAUGGCaUGGCCg -5'
23168 5' -59.5 NC_005178.1 + 9334 0.72 0.172124
Target:  5'- aGCGGCgGCGCCGcucaggAgCGUGCCGccaGCa -3'
miRNA:   3'- gCGCCGaCGCGGCua----UgGCAUGGC---CG- -5'
23168 5' -59.5 NC_005178.1 + 9666 0.7 0.242459
Target:  5'- gGUGGCUuCGCCGAgccgGCCGaGgCGGUc -3'
miRNA:   3'- gCGCCGAcGCGGCUa---UGGCaUgGCCG- -5'
23168 5' -59.5 NC_005178.1 + 9879 0.66 0.40394
Target:  5'- aGCGGCgcuguugcGCGCCcAUGCCca--CGGCa -3'
miRNA:   3'- gCGCCGa-------CGCGGcUAUGGcaugGCCG- -5'
23168 5' -59.5 NC_005178.1 + 10351 0.73 0.146252
Target:  5'- gCGCcgGGCUGCGCUG--GCCGaGCUGGUg -3'
miRNA:   3'- -GCG--CCGACGCGGCuaUGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 11464 0.67 0.359912
Target:  5'- uGCGGCaGCGUccgccccucgggCGAUgucguccagGCCGUcGCUGGCg -3'
miRNA:   3'- gCGCCGaCGCG------------GCUA---------UGGCA-UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.