miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23168 5' -59.5 NC_005178.1 + 12005 0.67 0.359912
Target:  5'- cCG-GGCUGCuGCCGAggucuuCCGaaugACCuGGCg -3'
miRNA:   3'- -GCgCCGACG-CGGCUau----GGCa---UGG-CCG- -5'
23168 5' -59.5 NC_005178.1 + 7886 0.69 0.261768
Target:  5'- uGUGcGCgGCGCCGAUGCgGUcCUGGa -3'
miRNA:   3'- gCGC-CGaCGCGGCUAUGgCAuGGCCg -5'
23168 5' -59.5 NC_005178.1 + 25629 0.69 0.268477
Target:  5'- uGCGGCgaaagccacCGCCGAguUCG-ACCGGCa -3'
miRNA:   3'- gCGCCGac-------GCGGCUauGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 17313 0.68 0.296702
Target:  5'- aGUGGUUGCGCCGGacggcgggGCCGaggucgcccaGCuCGGCa -3'
miRNA:   3'- gCGCCGACGCGGCUa-------UGGCa---------UG-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 29496 0.68 0.296702
Target:  5'- cCGCugGGCUGCgGCCGAUAU---GCgGGCa -3'
miRNA:   3'- -GCG--CCGACG-CGGCUAUGgcaUGgCCG- -5'
23168 5' -59.5 NC_005178.1 + 18797 0.68 0.304109
Target:  5'- aGCGGCacauUGUGCCuAUugCGUAUUaGGCa -3'
miRNA:   3'- gCGCCG----ACGCGGcUAugGCAUGG-CCG- -5'
23168 5' -59.5 NC_005178.1 + 26182 0.67 0.343264
Target:  5'- gCGCGGCggugGcCGCUGcgGgCGUggcGCUGGCu -3'
miRNA:   3'- -GCGCCGa---C-GCGGCuaUgGCA---UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 5252 0.67 0.349027
Target:  5'- uCGCGGUuaaccuggagcaguUG-GCCGAggccgccACCGUucaggGCCGGCg -3'
miRNA:   3'- -GCGCCG--------------ACgCGGCUa------UGGCA-----UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 31308 0.67 0.351518
Target:  5'- gCGCcgGGCUauGCGCCuGGcGCCGcGCCGGg -3'
miRNA:   3'- -GCG--CCGA--CGCGG-CUaUGGCaUGGCCg -5'
23168 5' -59.5 NC_005178.1 + 28301 0.69 0.24876
Target:  5'- uGCGGgaGCuGCCGggGCCGcuggagugGCUGGUg -3'
miRNA:   3'- gCGCCgaCG-CGGCuaUGGCa-------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 17996 0.69 0.24876
Target:  5'- uGCGGCUGC-CCagGGUGCCcagcuccagGCUGGCg -3'
miRNA:   3'- gCGCCGACGcGG--CUAUGGca-------UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 24448 0.7 0.242459
Target:  5'- gGCGGC-GCGCCGGUcaucgucgaGCUGUACaaGGUc -3'
miRNA:   3'- gCGCCGaCGCGGCUA---------UGGCAUGg-CCG- -5'
23168 5' -59.5 NC_005178.1 + 12937 0.78 0.064753
Target:  5'- aCGUGGC-GCGCCaGGUGCUG-GCCGGCc -3'
miRNA:   3'- -GCGCCGaCGCGG-CUAUGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 33913 0.74 0.120582
Target:  5'- gGCGGCgaugcucgGCgGCCGGUGCCGgcuuuCCGGg -3'
miRNA:   3'- gCGCCGa-------CG-CGGCUAUGGCau---GGCCg -5'
23168 5' -59.5 NC_005178.1 + 10351 0.73 0.146252
Target:  5'- gCGCcgGGCUGCGCUG--GCCGaGCUGGUg -3'
miRNA:   3'- -GCG--CCGACGCGGCuaUGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 32917 0.72 0.158713
Target:  5'- aGCGGCgugGuCGCCGGcaUGCCGaugGCUGGUu -3'
miRNA:   3'- gCGCCGa--C-GCGGCU--AUGGCa--UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 36699 0.71 0.183573
Target:  5'- aGCGGUUcugugggugcGCGCUGAaACCGgaucgcuccauuucaUGCCGGCg -3'
miRNA:   3'- gCGCCGA----------CGCGGCUaUGGC---------------AUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 29159 0.71 0.196208
Target:  5'- gCGCuGCUGUggaaucaGCCcAUGCCGUACUGGUu -3'
miRNA:   3'- -GCGcCGACG-------CGGcUAUGGCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 18375 0.71 0.196729
Target:  5'- aCGCGGCUGUaaCCGAcacccUGCCGcugaUGCgCGGCa -3'
miRNA:   3'- -GCGCCGACGc-GGCU-----AUGGC----AUG-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 9666 0.7 0.242459
Target:  5'- gGUGGCUuCGCCGAgccgGCCGaGgCGGUc -3'
miRNA:   3'- gCGCCGAcGCGGCUa---UGGCaUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.