miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23188 5' -57.7 NC_005259.1 + 49456 0.66 0.643094
Target:  5'- aGGCcgaCGCGuaugCCCGCAGCCGu -3'
miRNA:   3'- cCCGuugGCGCuguaGGGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 64726 0.66 0.632312
Target:  5'- cGGGCGGCUGCGcugccacgaGCAcggaCCgGCGGCCc- -3'
miRNA:   3'- -CCCGUUGGCGC---------UGUa---GGgUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 66452 0.66 0.632312
Target:  5'- uGGacaGAUCGCGGCGgucaacaacCUCACAGCCAc -3'
miRNA:   3'- cCCg--UUGGCGCUGUa--------GGGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 25735 0.66 0.610757
Target:  5'- cGGGUgccugagaguuGACCGCaGCG-CCCGCcGCCGAc -3'
miRNA:   3'- -CCCG-----------UUGGCGcUGUaGGGUGuCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 8221 0.66 0.607528
Target:  5'- uGGGCugcgcgaacagaucAGCCGCGuACA-CCCGaGGCCGGa -3'
miRNA:   3'- -CCCG--------------UUGGCGC-UGUaGGGUgUCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 60034 0.66 0.601076
Target:  5'- cGGGCAccguGCCGgGACGUaggugccagcggcgaCgGCAGCCGc -3'
miRNA:   3'- -CCCGU----UGGCgCUGUAg--------------GgUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 67636 0.66 0.600001
Target:  5'- uGGGCcgcucGCCGCG-CcgCCCGCgaGGCCc- -3'
miRNA:   3'- -CCCGu----UGGCGCuGuaGGGUG--UCGGuu -5'
23188 5' -57.7 NC_005259.1 + 13627 0.66 0.600001
Target:  5'- cGGCAGCCGUGAuCAgugCCCACGuuuCCu- -3'
miRNA:   3'- cCCGUUGGCGCU-GUa--GGGUGUc--GGuu -5'
23188 5' -57.7 NC_005259.1 + 68375 0.66 0.600001
Target:  5'- uGGUgaucGACCGUGACAaCgCCACcGCCGAg -3'
miRNA:   3'- cCCG----UUGGCGCUGUaG-GGUGuCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 28942 0.66 0.589272
Target:  5'- cGGGuCggUCGCGAUGaCCCAUGGgCCGAc -3'
miRNA:   3'- -CCC-GuuGGCGCUGUaGGGUGUC-GGUU- -5'
23188 5' -57.7 NC_005259.1 + 1255 0.66 0.589272
Target:  5'- cGGCGGCCacuaGGCcgCCC-CGGCCAc -3'
miRNA:   3'- cCCGUUGGcg--CUGuaGGGuGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 33142 0.67 0.578577
Target:  5'- aGGUccGCCGCcGCGUCcaCCGCAGCCGc -3'
miRNA:   3'- cCCGu-UGGCGcUGUAG--GGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 41158 0.67 0.578577
Target:  5'- aGGuaGGCCGCGAgGUCgCGC-GCCGu -3'
miRNA:   3'- -CCcgUUGGCGCUgUAGgGUGuCGGUu -5'
23188 5' -57.7 NC_005259.1 + 19363 0.67 0.578577
Target:  5'- cGGCAGCCGCGuCGgcgaUgGCGGCCu- -3'
miRNA:   3'- cCCGUUGGCGCuGUag--GgUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 21036 0.67 0.567925
Target:  5'- uGGCcGCCGCG-CcgCCCGCGaauauGCCGGg -3'
miRNA:   3'- cCCGuUGGCGCuGuaGGGUGU-----CGGUU- -5'
23188 5' -57.7 NC_005259.1 + 32866 0.67 0.567925
Target:  5'- uGGGCcGCCGgGcugucCGUCgCCAUGGCCAc -3'
miRNA:   3'- -CCCGuUGGCgCu----GUAG-GGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 7053 0.67 0.536298
Target:  5'- cGGguGCCGgGGCca-CCGCAGCCu- -3'
miRNA:   3'- cCCguUGGCgCUGuagGGUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 22703 0.67 0.536298
Target:  5'- gGGGCcGCCGUGGCugcguugUUCGCGGCCc- -3'
miRNA:   3'- -CCCGuUGGCGCUGua-----GGGUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 38853 0.67 0.536298
Target:  5'- cGGGCAGCuCGaccgGGCcgCCUACAGgCCGc -3'
miRNA:   3'- -CCCGUUG-GCg---CUGuaGGGUGUC-GGUu -5'
23188 5' -57.7 NC_005259.1 + 17452 0.67 0.535254
Target:  5'- cGGGCAAgUGCacGACGuuggggccaacgaUCCgGCAGCCGGu -3'
miRNA:   3'- -CCCGUUgGCG--CUGU-------------AGGgUGUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.