miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23191 3' -55.6 NC_005259.1 + 15416 0.66 0.77528
Target:  5'- aCACCGUgAgguguuccuuuuUGCUCGuCGG-GGUCAgcaGGCg -3'
miRNA:   3'- -GUGGCAgU------------ACGAGU-GCCaCCGGU---UCG- -5'
23191 3' -55.6 NC_005259.1 + 2766 0.66 0.76932
Target:  5'- aCGCgGUCGUGCagccaucgacgcagCGCGGcccGcGCCGGGCg -3'
miRNA:   3'- -GUGgCAGUACGa-------------GUGCCa--C-CGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 60642 0.66 0.76532
Target:  5'- uGCCGgUAUcGCUCgGCGGcGGCCucGGCa -3'
miRNA:   3'- gUGGCaGUA-CGAG-UGCCaCCGGu-UCG- -5'
23191 3' -55.6 NC_005259.1 + 45556 0.66 0.764316
Target:  5'- cCACCGcCAagcagauUGCUuucgCACGG-GGCCucGGCa -3'
miRNA:   3'- -GUGGCaGU-------ACGA----GUGCCaCCGGu-UCG- -5'
23191 3' -55.6 NC_005259.1 + 40726 0.66 0.762305
Target:  5'- aACCGUCG-GCUCugccgauguaggccACGGUGccGCCcuGCg -3'
miRNA:   3'- gUGGCAGUaCGAG--------------UGCCAC--CGGuuCG- -5'
23191 3' -55.6 NC_005259.1 + 12510 0.66 0.755227
Target:  5'- aACCGUC---CUCgACGGUGGCgaugauucccuCAGGCa -3'
miRNA:   3'- gUGGCAGuacGAG-UGCCACCG-----------GUUCG- -5'
23191 3' -55.6 NC_005259.1 + 16405 0.66 0.745012
Target:  5'- uCGCCGagCAccaGCgccgUACGGUGGCCAacuacgucgAGCu -3'
miRNA:   3'- -GUGGCa-GUa--CGa---GUGCCACCGGU---------UCG- -5'
23191 3' -55.6 NC_005259.1 + 50235 0.66 0.734686
Target:  5'- aCAUgGcC-UGCcacaUCGCGGUGGgCAAGCg -3'
miRNA:   3'- -GUGgCaGuACG----AGUGCCACCgGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 64388 0.66 0.72426
Target:  5'- aCGCUGUCggGC---CGGUGGCgCGAGUu -3'
miRNA:   3'- -GUGGCAGuaCGaguGCCACCG-GUUCG- -5'
23191 3' -55.6 NC_005259.1 + 55813 0.66 0.72426
Target:  5'- aGCuCGcCAUGCUCuaccaagcacaGCGG-GGCCA-GCg -3'
miRNA:   3'- gUG-GCaGUACGAG-----------UGCCaCCGGUuCG- -5'
23191 3' -55.6 NC_005259.1 + 10071 0.67 0.713744
Target:  5'- -gUCGUCG-GCgggCGCGGUGGC--AGCg -3'
miRNA:   3'- guGGCAGUaCGa--GUGCCACCGguUCG- -5'
23191 3' -55.6 NC_005259.1 + 68562 0.67 0.713744
Target:  5'- gCACCGaUCuacgUCACGGUGG-CAGGCc -3'
miRNA:   3'- -GUGGC-AGuacgAGUGCCACCgGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 33360 0.67 0.712688
Target:  5'- cCGCCGcCGcUGC-CGCuggcgagGGUGGCCAGcGCg -3'
miRNA:   3'- -GUGGCaGU-ACGaGUG-------CCACCGGUU-CG- -5'
23191 3' -55.6 NC_005259.1 + 52519 0.67 0.692491
Target:  5'- uCGCCGUCAaggGCgcacccgCGCGcaUGGCCGAGa -3'
miRNA:   3'- -GUGGCAGUa--CGa------GUGCc-ACCGGUUCg -5'
23191 3' -55.6 NC_005259.1 + 9147 0.67 0.681774
Target:  5'- aCACCGagggaUCAUGCUgGCucguuGUGGCCGaaaccgggGGCg -3'
miRNA:   3'- -GUGGC-----AGUACGAgUGc----CACCGGU--------UCG- -5'
23191 3' -55.6 NC_005259.1 + 54772 0.67 0.671011
Target:  5'- gCGCgCGUCGUGCgUAUcG-GGCCGGGCa -3'
miRNA:   3'- -GUG-GCAGUACGaGUGcCaCCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 46296 0.67 0.671011
Target:  5'- uCGCCGUCAccgGCUCGauGagcuacGCCGAGCg -3'
miRNA:   3'- -GUGGCAGUa--CGAGUgcCac----CGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 68223 0.67 0.660213
Target:  5'- gCGCCGagGcgGCUgcccucggUugGGUGGCCAAGg -3'
miRNA:   3'- -GUGGCagUa-CGA--------GugCCACCGGUUCg -5'
23191 3' -55.6 NC_005259.1 + 13960 0.68 0.649389
Target:  5'- uGCCGagGUGCUUgccuCGGUGGCagucuGCg -3'
miRNA:   3'- gUGGCagUACGAGu---GCCACCGguu--CG- -5'
23191 3' -55.6 NC_005259.1 + 16754 0.68 0.616864
Target:  5'- cUACCGcCcgGCcccucUCAgGGgGGCCGGGCa -3'
miRNA:   3'- -GUGGCaGuaCG-----AGUgCCaCCGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.