miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23191 3' -55.6 NC_005259.1 + 68562 0.67 0.713744
Target:  5'- gCACCGaUCuacgUCACGGUGG-CAGGCc -3'
miRNA:   3'- -GUGGC-AGuacgAGUGCCACCgGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 68223 0.67 0.660213
Target:  5'- gCGCCGagGcgGCUgcccucggUugGGUGGCCAAGg -3'
miRNA:   3'- -GUGGCagUa-CGA--------GugCCACCGGUUCg -5'
23191 3' -55.6 NC_005259.1 + 64388 0.66 0.72426
Target:  5'- aCGCUGUCggGC---CGGUGGCgCGAGUu -3'
miRNA:   3'- -GUGGCAGuaCGaguGCCACCG-GUUCG- -5'
23191 3' -55.6 NC_005259.1 + 62645 0.69 0.573717
Target:  5'- uGCCGUaCGUGCgCACGuuGUcGCCGGGCg -3'
miRNA:   3'- gUGGCA-GUACGaGUGC--CAcCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 60642 0.66 0.76532
Target:  5'- uGCCGgUAUcGCUCgGCGGcGGCCucGGCa -3'
miRNA:   3'- gUGGCaGUA-CGAG-UGCCaCCGGu-UCG- -5'
23191 3' -55.6 NC_005259.1 + 56014 0.69 0.55239
Target:  5'- cCACCGUgGUGCUCGCGuucgcacucGGCUAcGCc -3'
miRNA:   3'- -GUGGCAgUACGAGUGCca-------CCGGUuCG- -5'
23191 3' -55.6 NC_005259.1 + 55813 0.66 0.72426
Target:  5'- aGCuCGcCAUGCUCuaccaagcacaGCGG-GGCCA-GCg -3'
miRNA:   3'- gUG-GCaGUACGAG-----------UGCCaCCGGUuCG- -5'
23191 3' -55.6 NC_005259.1 + 54772 0.67 0.671011
Target:  5'- gCGCgCGUCGUGCgUAUcG-GGCCGGGCa -3'
miRNA:   3'- -GUG-GCAGUACGaGUGcCaCCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 54265 0.72 0.40343
Target:  5'- uCGCCGagAUGUaCGCGcUGGCCGGGCc -3'
miRNA:   3'- -GUGGCagUACGaGUGCcACCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 54148 0.69 0.541814
Target:  5'- aCACgGUCGUGCUCGCGaGguucgcgcUGcCCGAGCc -3'
miRNA:   3'- -GUGgCAGUACGAGUGC-C--------ACcGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 53459 0.7 0.520875
Target:  5'- cCGCCGUCAcuggccggUGC-CACccucaGGUGGCCAcccucggggccAGCg -3'
miRNA:   3'- -GUGGCAGU--------ACGaGUG-----CCACCGGU-----------UCG- -5'
23191 3' -55.6 NC_005259.1 + 52519 0.67 0.692491
Target:  5'- uCGCCGUCAaggGCgcacccgCGCGcaUGGCCGAGa -3'
miRNA:   3'- -GUGGCAGUa--CGa------GUGCc-ACCGGUUCg -5'
23191 3' -55.6 NC_005259.1 + 50235 0.66 0.734686
Target:  5'- aCAUgGcC-UGCcacaUCGCGGUGGgCAAGCg -3'
miRNA:   3'- -GUGgCaGuACG----AGUGCCACCgGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 46296 0.67 0.671011
Target:  5'- uCGCCGUCAccgGCUCGauGagcuacGCCGAGCg -3'
miRNA:   3'- -GUGGCAGUa--CGAGUgcCac----CGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 45751 0.68 0.606036
Target:  5'- cCACC-UCGUGg--GCGGUGGCCAccaugAGCa -3'
miRNA:   3'- -GUGGcAGUACgagUGCCACCGGU-----UCG- -5'
23191 3' -55.6 NC_005259.1 + 45556 0.66 0.764316
Target:  5'- cCACCGcCAagcagauUGCUuucgCACGG-GGCCucGGCa -3'
miRNA:   3'- -GUGGCaGU-------ACGA----GUGCCaCCGGu-UCG- -5'
23191 3' -55.6 NC_005259.1 + 45017 0.68 0.606036
Target:  5'- -cCCG-CGcGCcacCACGGUGGCCAAGa -3'
miRNA:   3'- guGGCaGUaCGa--GUGCCACCGGUUCg -5'
23191 3' -55.6 NC_005259.1 + 42108 0.68 0.606036
Target:  5'- aCACCaUCgGUGUucaUCACGG-GGCCGGGUu -3'
miRNA:   3'- -GUGGcAG-UACG---AGUGCCaCCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 40769 0.68 0.606036
Target:  5'- cCACCGUCG-GCggCGgGGUGGUCGAu- -3'
miRNA:   3'- -GUGGCAGUaCGa-GUgCCACCGGUUcg -5'
23191 3' -55.6 NC_005259.1 + 40726 0.66 0.762305
Target:  5'- aACCGUCG-GCUCugccgauguaggccACGGUGccGCCcuGCg -3'
miRNA:   3'- gUGGCAGUaCGAG--------------UGCCAC--CGGuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.