Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 29605 | 0.66 | 0.394178 |
Target: 5'- cGCUGAGCuuGGUCCaccccgaGGCGGUGCCg -3' miRNA: 3'- cUGGCUCG--CCGGGcag----CCGCUACGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 29170 | 0.67 | 0.353392 |
Target: 5'- cAUUGAGCGcGUUgGUCGGCGAcaggaUGCCg -3' miRNA: 3'- cUGGCUCGC-CGGgCAGCCGCU-----ACGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 28864 | 0.71 | 0.21567 |
Target: 5'- --gCGGGCGaGCucgCCGUCGGUugucGGUGCCCg -3' miRNA: 3'- cugGCUCGC-CG---GGCAGCCG----CUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 28327 | 0.69 | 0.264322 |
Target: 5'- aGCgCGAGCgccuuggugcucaccGGCCCGaugaUCGG-GGUGCCCg -3' miRNA: 3'- cUG-GCUCG---------------CCGGGC----AGCCgCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 28232 | 0.74 | 0.126586 |
Target: 5'- -gUCGAGCaucuGCUCGUCGGCGAUGaCCUg -3' miRNA: 3'- cuGGCUCGc---CGGGCAGCCGCUAC-GGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 27942 | 0.66 | 0.420069 |
Target: 5'- cACCGAGUGcGCCCa-CGGCucGAUGUCa -3' miRNA: 3'- cUGGCUCGC-CGGGcaGCCG--CUACGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 27911 | 0.76 | 0.089688 |
Target: 5'- aGCCGgucguagucGGCGGUCggcgguaugacgaUGUCGGCGGUGCCCg -3' miRNA: 3'- cUGGC---------UCGCCGG-------------GCAGCCGCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 27611 | 0.66 | 0.446963 |
Target: 5'- uGGCCGguacccauGGCGcGCCgcUCGG-GGUGCCCa -3' miRNA: 3'- -CUGGC--------UCGC-CGGgcAGCCgCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 24425 | 0.67 | 0.369343 |
Target: 5'- cGACCG-GCaGGCUCaugauguUCGGC-AUGCCCg -3' miRNA: 3'- -CUGGCuCG-CCGGGc------AGCCGcUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 23909 | 0.66 | 0.428926 |
Target: 5'- -gUCGAGCGuGCCCGUguagcCGGUcgggccgagaguGGUGCCg -3' miRNA: 3'- cuGGCUCGC-CGGGCA-----GCCG------------CUACGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 23368 | 0.68 | 0.337934 |
Target: 5'- gGGCCGGGCaGCgCGcCGGUGccGCCg -3' miRNA: 3'- -CUGGCUCGcCGgGCaGCCGCuaCGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 22169 | 0.68 | 0.330392 |
Target: 5'- uGAgUGAGC-GCCC--CGGCGAgcUGCCCg -3' miRNA: 3'- -CUgGCUCGcCGGGcaGCCGCU--ACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 22091 | 0.67 | 0.361307 |
Target: 5'- cGCCGAGCaGUCCG-CGuGCGccgccgagcuUGCCCg -3' miRNA: 3'- cUGGCUCGcCGGGCaGC-CGCu---------ACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 21830 | 0.77 | 0.08084 |
Target: 5'- cACCGuAGCGGCgaagGUCGGCGGUGCCg -3' miRNA: 3'- cUGGC-UCGCCGgg--CAGCCGCUACGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 19562 | 0.7 | 0.22651 |
Target: 5'- --gCGAGCGccGCCUugGUCGGCagccgGAUGCCCa -3' miRNA: 3'- cugGCUCGC--CGGG--CAGCCG-----CUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 19444 | 0.69 | 0.268117 |
Target: 5'- uGCCGGGCuGUUCGUCGGUcGUGgCCa -3' miRNA: 3'- cUGGCUCGcCGGGCAGCCGcUACgGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 19369 | 0.68 | 0.308513 |
Target: 5'- cAUCG-GCGGCagccgCGUCGGCGAUGgCg -3' miRNA: 3'- cUGGCuCGCCGg----GCAGCCGCUACgGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 17934 | 0.66 | 0.446963 |
Target: 5'- aAUCGAGCaGCgCC-UCGGUGGcaugGCCCa -3' miRNA: 3'- cUGGCUCGcCG-GGcAGCCGCUa---CGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 17587 | 0.68 | 0.322974 |
Target: 5'- cGCCGAGgGGCCgGUUgaggucuugGGCGG-GCCa -3' miRNA: 3'- cUGGCUCgCCGGgCAG---------CCGCUaCGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 15832 | 0.71 | 0.205278 |
Target: 5'- aGGCCGAucucgccaccGCcGCCCGUC-GCGGUGUCCc -3' miRNA: 3'- -CUGGCU----------CGcCGGGCAGcCGCUACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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