Results 1 - 20 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 4864 | 1.1 | 0.000257 |
Target: 5'- uGACCGAGCGGCCCGUCGGCGAUGCCCu -3' miRNA: 3'- -CUGGCUCGCCGGGCAGCCGCUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 58555 | 0.81 | 0.035892 |
Target: 5'- cAUCGAGUGGCUCGaCGGCGGUGUCCu -3' miRNA: 3'- cUGGCUCGCCGGGCaGCCGCUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 8718 | 0.81 | 0.04228 |
Target: 5'- uGCCGGGCGGCCaucguCGUCGGUGcgGCCa -3' miRNA: 3'- cUGGCUCGCCGG-----GCAGCCGCuaCGGg -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 21830 | 0.77 | 0.08084 |
Target: 5'- cACCGuAGCGGCgaagGUCGGCGGUGCCg -3' miRNA: 3'- cUGGC-UCGCCGgg--CAGCCGCUACGGg -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 61599 | 0.76 | 0.092346 |
Target: 5'- aGACCcgcaaCGGCauccucgucgCCGUCGGCGGUGCCCg -3' miRNA: 3'- -CUGGcuc--GCCG----------GGCAGCCGCUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 27911 | 0.76 | 0.089688 |
Target: 5'- aGCCGgucguagucGGCGGUCggcgguaugacgaUGUCGGCGGUGCCCg -3' miRNA: 3'- cUGGC---------UCGCCGG-------------GCAGCCGCUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 8465 | 0.75 | 0.099978 |
Target: 5'- gGGCCGGGaCGcagccGCUCGUCGGC-AUGCCCg -3' miRNA: 3'- -CUGGCUC-GC-----CGGGCAGCCGcUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 28232 | 0.74 | 0.126586 |
Target: 5'- -gUCGAGCaucuGCUCGUCGGCGAUGaCCUg -3' miRNA: 3'- cuGGCUCGc---CGGGCAGCCGCUAC-GGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 1570 | 0.74 | 0.126586 |
Target: 5'- uGCCGGGCucacgcuuGaGCgCGUCGGgGAUGCCCu -3' miRNA: 3'- cUGGCUCG--------C-CGgGCAGCCgCUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 12625 | 0.74 | 0.136475 |
Target: 5'- aGCCGucGCgGGCCgCGUCGGCugaucgucucgauGGUGCCCg -3' miRNA: 3'- cUGGCu-CG-CCGG-GCAGCCG-------------CUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 41613 | 0.73 | 0.158407 |
Target: 5'- uGACCG-GCGGCggUGUCGGCagcggcggcagcucGGUGCCCg -3' miRNA: 3'- -CUGGCuCGCCGg-GCAGCCG--------------CUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 52581 | 0.72 | 0.176673 |
Target: 5'- cACCGAG-GuGCCCGUCGaGCG--GCCCa -3' miRNA: 3'- cUGGCUCgC-CGGGCAGC-CGCuaCGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 51685 | 0.72 | 0.176673 |
Target: 5'- cGCCGAGCGGuacCCCGagGGUG-UGCCg -3' miRNA: 3'- cUGGCUCGCC---GGGCagCCGCuACGGg -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 8191 | 0.72 | 0.176673 |
Target: 5'- -cCCGAGgcCGGaaaUCGUCGGCGAUGCUg -3' miRNA: 3'- cuGGCUC--GCCg--GGCAGCCGCUACGGg -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 28864 | 0.71 | 0.21567 |
Target: 5'- --gCGGGCGaGCucgCCGUCGGUugucGGUGCCCg -3' miRNA: 3'- cugGCUCGC-CG---GGCAGCCG----CUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 49043 | 0.71 | 0.210419 |
Target: 5'- -uCCGcaacGGCGGCUCGgCGGUgugGGUGCCCg -3' miRNA: 3'- cuGGC----UCGCCGGGCaGCCG---CUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 15832 | 0.71 | 0.205278 |
Target: 5'- aGGCCGAucucgccaccGCcGCCCGUC-GCGGUGUCCc -3' miRNA: 3'- -CUGGCU----------CGcCGGGCAGcCGCUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 56463 | 0.71 | 0.200247 |
Target: 5'- aGCCGAGCGaGCCCcaCGGCauUGCCg -3' miRNA: 3'- cUGGCUCGC-CGGGcaGCCGcuACGGg -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 50276 | 0.71 | 0.193866 |
Target: 5'- cAUCGGGCcGCCCGgcaucgguaagucgUCGGUGGUGCUCg -3' miRNA: 3'- cUGGCUCGcCGGGC--------------AGCCGCUACGGG- -5' |
|||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 19562 | 0.7 | 0.22651 |
Target: 5'- --gCGAGCGccGCCUugGUCGGCagccgGAUGCCCa -3' miRNA: 3'- cugGCUCGC--CGGG--CAGCCG-----CUACGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home